The 2.0 version of rSNPBase

Variant report

Variant rs10409844
Chromosome Location chr19:21241537-21241538
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:21204400-21264800 Weak transcription Right Ventricle heart
2 chr19:21206200-21241600 Weak transcription H9 Cell Line embryonic stem cell
3 chr19:21221400-21242000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
4 chr19:21222400-21242200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr19:21223000-21244200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
6 chr19:21227800-21247200 Weak transcription HepG2 liver
7 chr19:21230600-21248400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
8 chr19:21230800-21243000 Weak transcription iPS-15b Cell Line embryonic stem cell
9 chr19:21231600-21241600 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
10 chr19:21231800-21244600 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
11 chr19:21232200-21242200 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
12 chr19:21232200-21242400 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
13 chr19:21232200-21243600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr19:21234200-21242400 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr19:21235200-21242000 Strong transcription HUES64 Cell Line embryonic stem cell
16 chr19:21235200-21242600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr19:21235400-21243200 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
18 chr19:21235600-21241600 ZNF genes & repeats Primary T cells fromperipheralblood blood
19 chr19:21235800-21241600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
20 chr19:21236000-21247000 Weak transcription Pancreas Pancrea
21 chr19:21236400-21264800 Weak transcription Skeletal Muscle Male skeletal muscle
22 chr19:21237000-21241600 ZNF genes & repeats Primary T helper cells PMA-I stimulated --
23 chr19:21237200-21241600 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr19:21237600-21241600 ZNF genes & repeats Fetal Brain Female brain
25 chr19:21238000-21241600 ZNF genes & repeats HMEC breast
26 chr19:21238200-21241600 ZNF genes & repeats Fetal Lung lung
27 chr19:21238200-21241600 ZNF genes & repeats NHEK skin
28 chr19:21238200-21241800 ZNF genes & repeats Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr19:21238400-21242200 ZNF genes & repeats Primary B cells from cord blood blood
30 chr19:21238400-21242400 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr19:21238400-21248400 Weak transcription Psoas Muscle Psoas
32 chr19:21238600-21241600 ZNF genes & repeats Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr19:21238600-21241600 Strong transcription Brain Anterior Caudate brain
34 chr19:21238600-21241600 ZNF genes & repeats NHDF-Ad bronchial
35 chr19:21238600-21241800 Strong transcription HUES48 Cell Line embryonic stem cell
36 chr19:21238800-21242200 Strong transcription HSMM muscle
37 chr19:21239000-21243200 Weak transcription K562 blood
38 chr19:21239200-21241600 Strong transcription HUES6 Cell Line embryonic stem cell
39 chr19:21239200-21245400 Weak transcription Esophagus oesophagus
40 chr19:21239200-21246800 Weak transcription Aorta Aorta
41 chr19:21239800-21241600 Strong transcription Dnd41 blood
42 chr19:21239800-21249400 Weak transcription Hela-S3 cervix
43 chr19:21240000-21241600 Weak transcription NHLF lung
44 chr19:21240000-21247400 Weak transcription Brain Substantia Nigra brain
45 chr19:21240000-21264800 Weak transcription ES-I3 Cell Line embryonic stem cell
46 chr19:21240000-21264800 Weak transcription Brain Inferior Temporal Lobe brain
47 chr19:21240200-21245400 Weak transcription Ovary ovary
48 chr19:21240200-21246200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
49 chr19:21240200-21247600 Weak transcription Brain Cingulate Gyrus brain
50 chr19:21240200-21264800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood

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Last update: Aug 31, 2015