Variant report

Variant	rs7254768
Chromosome Location	chr19:21199179-21199180
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr19:21198941-21199206	HepG2	liver:	n/a	chr19:21199102-21199113

Variant related genes	Relation type
ZNF430	TF binding region

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10164375	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10409844	0.81[ASN][1000 genomes]
rs10410901	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10412688	0.91[ASN][1000 genomes]
rs10413692	0.91[ASN][1000 genomes]
rs10417165	0.92[ASN][1000 genomes]
rs10418706	0.97[ASN][1000 genomes]
rs10421392	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10421819	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10422193	0.88[ASN][1000 genomes]
rs10425969	0.81[ASN][1000 genomes]
rs11085424	0.92[ASN][1000 genomes]
rs11666640	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11671894	0.92[ASN][1000 genomes]
rs11672142	0.81[ASN][1000 genomes]
rs11878599	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12104387	0.98[ASN][1000 genomes]
rs12608931	0.91[ASN][1000 genomes]
rs12609005	0.81[ASN][1000 genomes]
rs12609167	0.86[ASN][1000 genomes]
rs12609510	0.92[ASN][1000 genomes]
rs12609831	0.92[ASN][1000 genomes]
rs12611115	0.91[ASN][1000 genomes]
rs12973921	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12975789	0.92[ASN][1000 genomes]
rs12976796	0.97[ASN][1000 genomes]
rs1470021	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1470022	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1609441	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2013048	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2081050	0.91[ASN][1000 genomes]
rs2081052	0.85[ASN][1000 genomes]
rs2081054	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2081055	0.91[ASN][1000 genomes]
rs2081056	0.91[ASN][1000 genomes]
rs2081057	0.98[ASN][1000 genomes]
rs2098681	0.94[ASN][1000 genomes]
rs2099648	1.00[ASN][1000 genomes]
rs2112803	0.91[ASN][1000 genomes]
rs2164988	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2164989	0.81[ASN][1000 genomes]
rs2358789	0.81[ASN][1000 genomes]
rs2358792	0.94[ASN][1000 genomes]
rs2358795	0.92[ASN][1000 genomes]
rs2358804	0.88[EUR][1000 genomes]
rs2884548	0.98[ASN][1000 genomes]
rs4255903	0.98[ASN][1000 genomes]
rs4292035	0.95[ASN][1000 genomes]
rs4365405	0.91[ASN][1000 genomes]
rs4808273	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62122564	0.91[ASN][1000 genomes]
rs62122565	0.91[ASN][1000 genomes]
rs6511175	0.91[ASN][1000 genomes]
rs6511179	0.93[ASN][1000 genomes]
rs6511181	0.91[ASN][1000 genomes]
rs6511183	0.81[ASN][1000 genomes]
rs6511184	0.81[ASN][1000 genomes]
rs6511195	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6511198	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6511200	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7247413	0.92[ASN][1000 genomes]
rs7247553	1.00[ASN][1000 genomes]
rs7248087	0.94[ASN][1000 genomes]
rs7249283	0.81[ASN][1000 genomes]
rs7249651	0.85[AFR][1000 genomes]
rs7252277	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7253530	0.92[ASN][1000 genomes]
rs7254722	0.89[ASN][1000 genomes]
rs7258477	0.98[ASN][1000 genomes]
rs7258831	0.84[ASN][1000 genomes]
rs7259653	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8102966	0.98[ASN][1000 genomes]
rs8103696	0.92[ASN][1000 genomes]
rs8106801	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8107982	0.81[ASN][1000 genomes]
rs8109577	0.84[ASN][1000 genomes]
rs8112054	0.81[ASN][1000 genomes]
rs8112216	0.81[ASN][1000 genomes]
rs9304980	0.81[ASN][1000 genomes]
rs9941463	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062776	chr19:20818886-21273361	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv932110	chr19:20818886-21278952	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv2763043	chr19:20818886-21290543	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv3385528	chr19:21030777-21495566	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv817536	chr19:21041855-21348237	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv1850387	chr19:21109758-21294264	Active TSS ZNF genes & repeats Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv911411	chr19:21184533-21263518	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv578949	chr19:21190572-21244049	ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21192200-21203000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr19:21192400-21203000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr19:21192400-21203400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr19:21192600-21203000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links