Variant report

Variant	rs482904
Chromosome Location	chr6:64070910-64070911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1525354	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1619321	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1621804	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1625205	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1711897	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1711898	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1711899	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1711900	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1711901	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1711902	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1711903	0.95[ASN][1000 genomes]
rs1711904	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1711912	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1711913	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1711914	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1711915	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1723502	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1723504	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1723506	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1723507	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1723508	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1723531	0.84[AMR][1000 genomes]
rs1741780	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1741782	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1741783	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1741784	0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1741786	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1741787	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1741788	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1741789	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1741790	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1741799	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1779753	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1779755	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1779756	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs1779757	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs1779758	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1779760	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1779761	0.92[AMR][1000 genomes]
rs1779762	0.96[AMR][1000 genomes]
rs1936532	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2474905	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2474908	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2677021	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2677022	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2677023	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2677024	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2753069	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2753070	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2800036	0.80[AMR][1000 genomes]
rs4710426	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4710427	0.84[AMR][1000 genomes]
rs58623141	0.88[AMR][1000 genomes]
rs59943612	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60505637	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs61229307	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6454169	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6933112	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7381742	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7382020	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7739266	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7752941	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7757686	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7758841	0.98[ASN][1000 genomes]
rs7771677	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs824372	0.87[ASN][1000 genomes]
rs824385	0.84[AMR][1000 genomes]
rs824387	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1031548	chr6:64026862-64102045	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1030651	chr6:64028392-64102045	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv3400742	chr6:64068993-64073191	Weak transcription ZNF genes & repeats Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
6	esv3423105	chr6:64070493-64074791	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64040400-64071200	Weak transcription	Placenta	Placenta
2	chr6:64062600-64071200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:64066000-64071400	Weak transcription	A549	lung
4	chr6:64066000-64071600	Weak transcription	HepG2	liver

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