Variant report

Variant rs533734
Chromosome Location chr19:56612698-56612699
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:56592600-56620000 Weak transcription HSMMtube muscle
2 chr19:56592800-56622600 Weak transcription Primary T helper naive cells from peripheral blood blood
3 chr19:56593000-56616200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr19:56593000-56616600 Weak transcription Primary T killer memory cells from peripheral blood blood
5 chr19:56593000-56616800 Weak transcription Primary T killer naive cells fromperipheralblood blood
6 chr19:56593000-56631200 Weak transcription Pancreatic Islets Pancreatic Islet
7 chr19:56593600-56616000 Weak transcription Stomach Mucosa stomach
8 chr19:56594800-56616800 Weak transcription HUVEC blood vessel
9 chr19:56596600-56614800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
10 chr19:56597200-56619400 Weak transcription ES-I3 Cell Line embryonic stem cell
11 chr19:56599800-56615200 Strong transcription Liver Liver
12 chr19:56600000-56619000 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
13 chr19:56600400-56614400 Strong transcription HepG2 liver
14 chr19:56600800-56616800 Weak transcription Small Intestine intestine
15 chr19:56602800-56614400 ZNF genes & repeats Fetal Stomach stomach
16 chr19:56602800-56620000 Weak transcription NH-A brain
17 chr19:56603000-56616600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
18 chr19:56603200-56619800 Weak transcription NHDF-Ad bronchial
19 chr19:56603800-56616800 Weak transcription Psoas Muscle Psoas
20 chr19:56604000-56614800 Strong transcription Rectal Mucosa Donor 29 rectum
21 chr19:56604800-56616200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr19:56604800-56616800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr19:56605000-56614400 Strong transcription Duodenum Mucosa Duodenum
24 chr19:56605000-56615000 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
25 chr19:56605000-56616400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr19:56605200-56615000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr19:56605200-56615000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr19:56605200-56617000 Weak transcription Brain Angular Gyrus brain
29 chr19:56605200-56619800 Weak transcription HSMM muscle
30 chr19:56605200-56620000 Weak transcription Fetal Kidney kidney
31 chr19:56605400-56615000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
32 chr19:56605600-56615000 Strong transcription Cortex derived primary cultured neurospheres brain
33 chr19:56605600-56615000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
34 chr19:56606000-56615800 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr19:56606200-56614200 Strong transcription Rectal Mucosa Donor 31 rectum
36 chr19:56606200-56615000 Strong transcription Sigmoid Colon Sigmoid Colon
37 chr19:56606200-56615200 Strong transcription Colonic Mucosa Colon
38 chr19:56606200-56615200 Strong transcription Thymus Thymus
39 chr19:56606400-56613000 Strong transcription Breast Myoepithelial Primary Cells Breast
40 chr19:56606400-56615200 Strong transcription Esophagus oesophagus
41 chr19:56606400-56615200 Strong transcription A549 lung
42 chr19:56606400-56616600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
43 chr19:56606600-56614400 Strong transcription Stomach Smooth Muscle stomach
44 chr19:56606800-56614000 Strong transcription HUES64 Cell Line embryonic stem cell
45 chr19:56606800-56614000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr19:56606800-56614200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
47 chr19:56606800-56614600 Strong transcription Primary neutrophils fromperipheralblood blood
48 chr19:56607000-56613000 Strong transcription Primary hematopoietic stem cells short term culture blood
49 chr19:56607000-56614600 Strong transcription Primary T helper 17 cells PMA-I stimulated --
50 chr19:56607000-56615000 Strong transcription Primary T helper cells fromperipheralblood blood

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