Variant report

Variant rs578990
Chromosome Location chr19:56624712-56624713
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:56593000-56631200 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr19:56616000-56626600 Enhancers Primary T helper cells fromperipheralblood blood
3 chr19:56616000-56627000 Enhancers Liver Liver
4 chr19:56616000-56627200 Enhancers H1 Cell Line embryonic stem cell
5 chr19:56617200-56629200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr19:56618600-56630000 Weak transcription Dnd41 blood
7 chr19:56618800-56626400 Enhancers Fetal Thymus thymus
8 chr19:56619200-56627200 Enhancers Left Ventricle heart
9 chr19:56619600-56625000 Enhancers Fetal Heart heart
10 chr19:56619600-56627200 Enhancers Primary Natural Killer cells fromperipheralblood blood
11 chr19:56619800-56624800 Enhancers Fetal Intestine Large intestine
12 chr19:56619800-56625400 Enhancers Fetal Lung lung
13 chr19:56620000-56627000 Enhancers Primary monocytes fromperipheralblood blood
14 chr19:56620200-56625000 Enhancers Rectal Mucosa Donor 31 rectum
15 chr19:56620400-56625400 Enhancers Fetal Adrenal Gland Adrenal Gland
16 chr19:56620400-56631000 Enhancers Pancreas Pancrea
17 chr19:56620600-56625000 Enhancers Stomach Mucosa stomach
18 chr19:56620800-56625800 Enhancers Brain Hippocampus Middle brain
19 chr19:56620800-56626200 Enhancers Fetal Muscle Leg muscle
20 chr19:56620800-56627200 Enhancers Right Atrium heart
21 chr19:56620800-56630400 Enhancers Skeletal Muscle Female skeletal muscle
22 chr19:56620800-56631000 Weak transcription Aorta Aorta
23 chr19:56621000-56626000 Weak transcription NHEK skin
24 chr19:56621000-56630000 Weak transcription NHDF-Ad bronchial
25 chr19:56621400-56625400 Enhancers HUVEC blood vessel
26 chr19:56621600-56625000 Enhancers ES-I3 Cell Line embryonic stem cell
27 chr19:56621600-56625000 Enhancers HSMM muscle
28 chr19:56621600-56625200 Enhancers Brain Substantia Nigra brain
29 chr19:56621600-56626600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
30 chr19:56621600-56626600 Enhancers Brain Dorsolateral Prefrontal Cortex brain
31 chr19:56621600-56626800 Enhancers HUES6 Cell Line embryonic stem cell
32 chr19:56621800-56624800 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr19:56621800-56624800 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
34 chr19:56621800-56625000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
35 chr19:56621800-56625000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr19:56621800-56626400 Enhancers iPS-18 Cell Line embryonic stem cell
37 chr19:56621800-56626600 Enhancers HUES64 Cell Line embryonic stem cell
38 chr19:56622000-56625000 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
39 chr19:56622000-56625000 Weak transcription Fetal Kidney kidney
40 chr19:56622000-56625000 Genic enhancers Fetal Stomach stomach
41 chr19:56622000-56625200 Enhancers Esophagus oesophagus
42 chr19:56622000-56625200 Genic enhancers Gastric stomach
43 chr19:56622000-56625600 Enhancers Sigmoid Colon Sigmoid Colon
44 chr19:56622000-56626400 Enhancers Primary T helper cells PMA-I stimulated --
45 chr19:56622000-56626800 Enhancers Breast Myoepithelial Primary Cells Breast
46 chr19:56622000-56627200 Enhancers Psoas Muscle Psoas
47 chr19:56622000-56627600 Enhancers Brain Inferior Temporal Lobe brain
48 chr19:56622000-56628200 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
49 chr19:56622200-56625600 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr19:56622200-56625600 Enhancers Small Intestine intestine

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