Variant report

Variant	rs55779505
Chromosome Location	chr6:132713650-132713651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132600570..132601283-chr6:132713650..132714534,4	K562	blood:
2	chr6:132621208..132622414-chr6:132713427..132714582,10	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1416100	1.00[ASN][1000 genomes]
rs1577995	1.00[ASN][1000 genomes]
rs17061243	1.00[ASN][1000 genomes]
rs17190773	1.00[ASN][1000 genomes]
rs2153176	1.00[ASN][1000 genomes]
rs34871318	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs36032364	1.00[ASN][1000 genomes]
rs3861470	1.00[ASN][1000 genomes]
rs55753187	1.00[ASN][1000 genomes]
rs56067804	1.00[ASN][1000 genomes]
rs56172786	1.00[ASN][1000 genomes]
rs56336490	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66578544	1.00[ASN][1000 genomes]
rs6925224	1.00[ASN][1000 genomes]
rs72994859	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72994861	1.00[ASN][1000 genomes]
rs72994866	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72994868	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72994871	1.00[ASN][1000 genomes]
rs72994872	1.00[ASN][1000 genomes]
rs72994875	1.00[ASN][1000 genomes]
rs7449646	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7739846	1.00[ASN][1000 genomes]
rs7755527	1.00[ASN][1000 genomes]
rs7755532	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7773683	1.00[ASN][1000 genomes]
rs951466	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs951467	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs951468	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886675	chr6:132683762-132730947	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604668	chr6:132687248-132731358	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv5480	chr6:132705614-132714040	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv604677	chr6:132708163-132718231	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv604690	chr6:132709300-132718231	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132711600-132713800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:132712400-132713800	Enhancers	NHEK	skin
3	chr6:132712800-132713800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:132712800-132713800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:132712800-132713800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:132712800-132713800	Flanking Active TSS	Fetal Brain Male	brain
7	chr6:132712800-132713800	Flanking Active TSS	HSMMtube	muscle
8	chr6:132712800-132714000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:132712800-132714000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:132712800-132714000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
11	chr6:132712800-132714000	Flanking Active TSS	Fetal Lung	lung
12	chr6:132712800-132714000	Flanking Active TSS	NHDF-Ad	bronchial
13	chr6:132712800-132714400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:132712800-132714400	Enhancers	Fetal Kidney	kidney
15	chr6:132712800-132714600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:132713000-132713800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr6:132713000-132713800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:132713000-132713800	Enhancers	H9 Cell Line	embryonic stem cell
19	chr6:132713000-132713800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:132713000-132713800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:132713000-132713800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:132713000-132714000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr6:132713000-132714000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr6:132713000-132714000	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr6:132713200-132713800	Enhancers	Fetal Muscle Leg	muscle
26	chr6:132713200-132714000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr6:132713200-132714000	Enhancers	HMEC	breast
28	chr6:132713200-132714200	Enhancers	Primary B cells from cord blood	blood
29	chr6:132713200-132714400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:132713200-132714800	Enhancers	Fetal Stomach	stomach
31	chr6:132713200-132719200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:132713400-132713800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:132713400-132713800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:132713400-132713800	Flanking Active TSS	Brain Germinal Matrix	brain
35	chr6:132713400-132713800	Active TSS	Fetal Brain Female	brain
36	chr6:132713400-132713800	Flanking Active TSS	HSMM	muscle
37	chr6:132713400-132714000	Flanking Active TSS	NHLF	lung
38	chr6:132713400-132720000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:132713600-132713800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:132713600-132713800	Enhancers	Brain Anterior Caudate	brain
41	chr6:132713600-132713800	Enhancers	Brain Hippocampus Middle	brain
42	chr6:132713600-132714000	Enhancers	Brain Substantia Nigra	brain
43	chr6:132713600-132714000	Enhancers	NH-A	brain
44	chr6:132713600-132714200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:132713600-132714200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:132713600-132714200	Enhancers	Muscle Satellite Cultured Cells	--
47	chr6:132713600-132714400	Enhancers	Osteobl	bone
48	chr6:132713600-132714800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links