Variant report

Variant	rs17061243
Chromosome Location	chr6:132736337-132736338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132734319..132737219-chr6:132761088..132762753,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1416100	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1577995	1.00[ASN][1000 genomes]
rs17190773	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153176	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327243	0.82[EUR][1000 genomes]
rs34871318	1.00[ASN][1000 genomes]
rs36032364	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3861470	1.00[ASN][1000 genomes]
rs55753187	1.00[ASN][1000 genomes]
rs55779505	1.00[ASN][1000 genomes]
rs56067804	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56172786	1.00[ASN][1000 genomes]
rs56336490	1.00[ASN][1000 genomes]
rs66578544	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925224	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72994859	1.00[ASN][1000 genomes]
rs72994861	1.00[ASN][1000 genomes]
rs72994866	1.00[ASN][1000 genomes]
rs72994868	1.00[ASN][1000 genomes]
rs72994871	1.00[ASN][1000 genomes]
rs72994872	1.00[ASN][1000 genomes]
rs72994875	1.00[ASN][1000 genomes]
rs7449646	1.00[ASN][1000 genomes]
rs7739846	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755527	1.00[ASN][1000 genomes]
rs7755532	1.00[ASN][1000 genomes]
rs7761178	0.83[EUR][1000 genomes]
rs7773522	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773683	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951466	1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs951467	1.00[ASN][1000 genomes]
rs951468	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132735400-132736400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:132735400-132736800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:132736000-132736600	Enhancers	NHDF-Ad	bronchial
4	chr6:132736000-132736800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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