Variant report

Variant	rs1416100
Chromosome Location	chr6:132730947-132730948
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1577995	0.83[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17061243	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17190773	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34871318	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36032364	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3861470	1.00[ASN][1000 genomes]
rs55753187	1.00[ASN][1000 genomes]
rs55779505	1.00[ASN][1000 genomes]
rs56067804	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56172786	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56336490	1.00[ASN][1000 genomes]
rs66578544	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925224	1.00[ASN][1000 genomes]
rs72994859	1.00[ASN][1000 genomes]
rs72994861	1.00[ASN][1000 genomes]
rs72994866	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72994868	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72994871	1.00[ASN][1000 genomes]
rs72994872	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72994875	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7449646	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739846	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755527	1.00[ASN][1000 genomes]
rs7755532	1.00[ASN][1000 genomes]
rs7773522	0.80[EUR][1000 genomes]
rs7773683	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951466	0.82[CEU][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951467	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951468	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886675	chr6:132683762-132730947	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604668	chr6:132687248-132731358	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1416100	MOXD1	cis	lymphoblastoid	seeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132725200-132734800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:132726400-132734200	Weak transcription	Fetal Kidney	kidney
3	chr6:132726600-132733600	Weak transcription	NHDF-Ad	bronchial
4	chr6:132727200-132733800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:132727600-132732200	Weak transcription	Osteobl	bone
6	chr6:132727800-132732200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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