Variant report

Variant	rs66578544
Chromosome Location	chr6:132733890-132733891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1416100	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1577995	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17061243	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17190773	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153176	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34871318	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36032364	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3861470	1.00[ASN][1000 genomes]
rs55753187	1.00[ASN][1000 genomes]
rs55779505	1.00[ASN][1000 genomes]
rs56067804	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56172786	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56336490	1.00[ASN][1000 genomes]
rs6925224	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72994859	1.00[ASN][1000 genomes]
rs72994861	1.00[ASN][1000 genomes]
rs72994866	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72994868	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72994871	1.00[ASN][1000 genomes]
rs72994872	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72994875	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7449646	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739846	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755527	1.00[ASN][1000 genomes]
rs7755532	1.00[ASN][1000 genomes]
rs7773522	0.80[EUR][1000 genomes]
rs7773683	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951466	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951467	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951468	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132725200-132734800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:132726400-132734200	Weak transcription	Fetal Kidney	kidney
3	chr6:132732200-132734000	Enhancers	Osteobl	bone
4	chr6:132732200-132735400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:132733600-132735600	Enhancers	NHDF-Ad	bronchial
6	chr6:132733800-132734400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links