Variant report
| Variant | rs6925224 |
|---|---|
| Chromosome Location | chr6:132751033-132751034 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs1416100 | 1.00[ASN][1000 genomes] |
| rs1577995 | 1.00[ASN][1000 genomes] |
| rs17061243 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17190773 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2153176 | 1.00[ASN][1000 genomes] |
| rs2327243 | 0.83[EUR][1000 genomes] |
| rs34871318 | 1.00[ASN][1000 genomes] |
| rs36032364 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3861470 | 1.00[ASN][1000 genomes] |
| rs55753187 | 1.00[ASN][1000 genomes] |
| rs55779505 | 1.00[ASN][1000 genomes] |
| rs56067804 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56172786 | 1.00[ASN][1000 genomes] |
| rs56336490 | 1.00[ASN][1000 genomes] |
| rs66578544 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72994859 | 1.00[ASN][1000 genomes] |
| rs72994861 | 1.00[ASN][1000 genomes] |
| rs72994866 | 1.00[ASN][1000 genomes] |
| rs72994868 | 1.00[ASN][1000 genomes] |
| rs72994871 | 1.00[ASN][1000 genomes] |
| rs72994872 | 1.00[ASN][1000 genomes] |
| rs72994875 | 1.00[ASN][1000 genomes] |
| rs7449646 | 1.00[ASN][1000 genomes] |
| rs7739846 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7755527 | 1.00[ASN][1000 genomes] |
| rs7755532 | 1.00[ASN][1000 genomes] |
| rs7761178 | 0.85[EUR][1000 genomes] |
| rs7773522 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7773683 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs951466 | 1.00[ASN][1000 genomes] |
| rs951467 | 1.00[ASN][1000 genomes] |
| rs951468 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830811 | chr6:132623160-132787539 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:132736800-132764600 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
| 2 | chr6:132749000-132754000 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
