Variant report

Variant	rs7449646
Chromosome Location	chr6:132716733-132716734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1416100	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1577995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17061243	1.00[ASN][1000 genomes]
rs17190773	1.00[ASN][1000 genomes]
rs2153176	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34871318	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36032364	1.00[ASN][1000 genomes]
rs3861470	1.00[ASN][1000 genomes]
rs55753187	1.00[ASN][1000 genomes]
rs55779505	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56067804	1.00[ASN][1000 genomes]
rs56172786	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56336490	1.00[ASN][1000 genomes]
rs66578544	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925224	1.00[ASN][1000 genomes]
rs72994859	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72994861	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72994866	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72994868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72994871	1.00[ASN][1000 genomes]
rs72994872	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72994875	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739846	1.00[ASN][1000 genomes]
rs7755527	1.00[ASN][1000 genomes]
rs7755532	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773683	1.00[ASN][1000 genomes]
rs951466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886675	chr6:132683762-132730947	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604668	chr6:132687248-132731358	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604677	chr6:132708163-132718231	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv604690	chr6:132709300-132718231	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132713200-132719200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:132713400-132720000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:132714000-132721200	Weak transcription	NH-A	brain
4	chr6:132714400-132720200	Weak transcription	Osteobl	bone
5	chr6:132714400-132720800	Weak transcription	HSMMtube	muscle
6	chr6:132714800-132721000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:132715200-132718000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:132715200-132718200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:132715200-132718200	Weak transcription	NHDF-Ad	bronchial
10	chr6:132715200-132721800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:132715400-132717400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:132715400-132719000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:132715400-132719800	Weak transcription	Lung	lung

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