Variant report

Variant	rs56014746
Chromosome Location	chr9:110369281-110369282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12115410	1.00[AMR][1000 genomes]
rs12115825	1.00[AMR][1000 genomes]
rs56164957	1.00[AMR][1000 genomes]
rs56286321	1.00[AMR][1000 genomes]
rs58219987	1.00[AMR][1000 genomes]
rs60226997	1.00[AMR][1000 genomes]
rs60353834	1.00[AMR][1000 genomes]
rs73513160	1.00[AMR][1000 genomes]
rs73513163	1.00[AMR][1000 genomes]
rs73513177	1.00[AMR][1000 genomes]
rs73653607	1.00[AMR][1000 genomes]
rs73653608	1.00[AMR][1000 genomes]
rs73653609	1.00[AMR][1000 genomes]
rs73653612	1.00[AMR][1000 genomes]
rs73653614	1.00[AMR][1000 genomes]
rs73656340	1.00[AMR][1000 genomes]
rs73656341	1.00[AMR][1000 genomes]
rs73656342	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110359200-110370000	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr9:110367200-110369800	Enhancers	Rectal Mucosa Donor 29	rectum
3	chr9:110367600-110369400	Enhancers	Fetal Intestine Large	intestine
4	chr9:110368200-110369400	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr9:110368400-110369400	Enhancers	Fetal Intestine Small	intestine
6	chr9:110369000-110369400	Enhancers	Colonic Mucosa	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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