Variant report

Variant	rs56164957
Chromosome Location	chr9:110347055-110347056
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12115410	1.00[AMR][1000 genomes]
rs12115825	1.00[AMR][1000 genomes]
rs56014746	1.00[AMR][1000 genomes]
rs56286321	1.00[AMR][1000 genomes]
rs58219987	1.00[AMR][1000 genomes]
rs60226997	1.00[AMR][1000 genomes]
rs60353834	1.00[AMR][1000 genomes]
rs73513160	1.00[AMR][1000 genomes]
rs73513163	1.00[AMR][1000 genomes]
rs73513177	1.00[AMR][1000 genomes]
rs73653607	1.00[AMR][1000 genomes]
rs73653608	1.00[AMR][1000 genomes]
rs73653609	1.00[AMR][1000 genomes]
rs73653612	1.00[AMR][1000 genomes]
rs73653614	1.00[AMR][1000 genomes]
rs73656340	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656341	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656342	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110346200-110347200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr9:110346400-110347200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:110346400-110347200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr9:110346400-110349400	Enhancers	Stomach Mucosa	stomach
5	chr9:110346600-110347200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:110346800-110347200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:110346800-110349600	Enhancers	Duodenum Mucosa	Duodenum
8	chr9:110347000-110347200	Enhancers	Right Atrium	heart
9	chr9:110347000-110348200	Enhancers	Gastric	stomach
10	chr9:110347000-110349600	Enhancers	Fetal Intestine Large	intestine
11	chr9:110347000-110349600	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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