Variant report

Variant	rs73656342
Chromosome Location	chr9:110349909-110349910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110349255..110352052-chr9:110381583..110383988,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12115410	1.00[AMR][1000 genomes]
rs12115825	1.00[AMR][1000 genomes]
rs56014746	1.00[AMR][1000 genomes]
rs56164957	1.00[AMR][1000 genomes]
rs56286321	1.00[AMR][1000 genomes]
rs58219987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60226997	1.00[AMR][1000 genomes]
rs60353834	1.00[AMR][1000 genomes]
rs73513160	1.00[AMR][1000 genomes]
rs73513163	1.00[AMR][1000 genomes]
rs73513177	1.00[AMR][1000 genomes]
rs73653607	1.00[AMR][1000 genomes]
rs73653608	1.00[AMR][1000 genomes]
rs73653609	1.00[AMR][1000 genomes]
rs73653612	1.00[AMR][1000 genomes]
rs73653614	1.00[AMR][1000 genomes]
rs73656340	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656341	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110347200-110350600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:110348200-110350200	Weak transcription	Gastric	stomach
3	chr9:110348800-110350000	Enhancers	Left Ventricle	heart
4	chr9:110348800-110350200	Enhancers	Spleen	Spleen
5	chr9:110349000-110352200	Enhancers	Lung	lung
6	chr9:110349400-110350400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr9:110349400-110350400	Enhancers	Fetal Muscle Leg	muscle
8	chr9:110349400-110350800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr9:110349600-110350000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:110349600-110350000	Flanking Active TSS	Pancreas	Pancrea
11	chr9:110349600-110350000	Enhancers	NHEK	skin
12	chr9:110349600-110350200	Enhancers	Stomach Mucosa	stomach
13	chr9:110349600-110350400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:110349600-110350400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
15	chr9:110349600-110350400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
16	chr9:110349600-110350400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:110349600-110350400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr9:110349600-110350400	Flanking Active TSS	Liver	Liver
19	chr9:110349600-110350400	Flanking Active TSS	Fetal Intestine Small	intestine
20	chr9:110349600-110350400	Active TSS	Rectal Smooth Muscle	rectum
21	chr9:110349600-110350400	Flanking Bivalent TSS/Enh	HepG2	liver
22	chr9:110349600-110350400	Active TSS	Osteobl	bone
23	chr9:110349600-110350600	Active TSS	Brain Hippocampus Middle	brain
24	chr9:110349600-110350600	Flanking Active TSS	Fetal Intestine Large	intestine
25	chr9:110349600-110350600	Flanking Active TSS	HUVEC	blood vessel
26	chr9:110349800-110350000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr9:110349800-110350200	Active TSS	Primary hematopoietic stem cells	blood
28	chr9:110349800-110350200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr9:110349800-110350200	Active TSS	Adipose Nuclei	Adipose
30	chr9:110349800-110350200	Active TSS	Colonic Mucosa	Colon
31	chr9:110349800-110350200	Active TSS	Duodenum Mucosa	Duodenum
32	chr9:110349800-110350200	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr9:110349800-110350200	Active TSS	Rectal Mucosa Donor 31	rectum
34	chr9:110349800-110350400	Active TSS	Aorta	Aorta
35	chr9:110349800-110350400	Active TSS	Duodenum Smooth Muscle	Duodenum
36	chr9:110349800-110350400	Enhancers	Esophagus	oesophagus
37	chr9:110349800-110350400	Flanking Active TSS	Placenta	Placenta
38	chr9:110349800-110350800	Weak transcription	Right Atrium	heart
39	chr9:110349800-110350800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr9:110349800-110351000	Enhancers	Fetal Muscle Trunk	muscle

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