Variant report

Variant	rs60226997
Chromosome Location	chr9:110437590-110437591
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110425959..110427637-chr9:110435730..110438629,2	MCF-7	breast:
2	chr9:110434606..110437399-chr9:110437465..110439039,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12115410	1.00[AMR][1000 genomes]
rs12115825	1.00[AMR][1000 genomes]
rs56014746	1.00[AMR][1000 genomes]
rs56164957	1.00[AMR][1000 genomes]
rs56286321	1.00[AMR][1000 genomes]
rs58219987	1.00[AMR][1000 genomes]
rs60353834	1.00[AMR][1000 genomes]
rs73513160	1.00[AMR][1000 genomes]
rs73513163	1.00[AMR][1000 genomes]
rs73513177	1.00[AMR][1000 genomes]
rs73653607	1.00[AMR][1000 genomes]
rs73653608	1.00[AMR][1000 genomes]
rs73653609	1.00[AMR][1000 genomes]
rs73653612	1.00[AMR][1000 genomes]
rs73653614	1.00[AMR][1000 genomes]
rs73656340	1.00[AMR][1000 genomes]
rs73656341	1.00[AMR][1000 genomes]
rs73656342	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv521747	chr9:110418574-110441113	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110435600-110437600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr9:110435600-110438200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr9:110435600-110439600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:110436000-110437800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr9:110436400-110437800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:110436800-110437600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:110436800-110437600	Enhancers	Adipose Nuclei	Adipose
8	chr9:110436800-110437600	Enhancers	Placenta	Placenta
9	chr9:110436800-110437600	Enhancers	NHDF-Ad	bronchial
10	chr9:110436800-110438600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr9:110436800-110438800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
12	chr9:110437000-110438000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr9:110437000-110438600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr9:110437200-110437600	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr9:110437200-110437800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr9:110437200-110438200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr9:110437200-110444000	Weak transcription	Fetal Muscle Leg	muscle
18	chr9:110437400-110437800	Enhancers	H9 Cell Line	embryonic stem cell
19	chr9:110437400-110437800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:110437400-110438000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr9:110437400-110438200	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr9:110437400-110440800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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