Variant report
| Variant | rs60353834 |
|---|---|
| Chromosome Location | chr9:110422640-110422641 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:110422278..110425176-chr9:110442669..110445406,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs12115410 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12115825 | 1.00[AMR][1000 genomes] |
| rs56014746 | 1.00[AMR][1000 genomes] |
| rs56164957 | 1.00[AMR][1000 genomes] |
| rs56286321 | 1.00[AMR][1000 genomes] |
| rs58219987 | 1.00[AMR][1000 genomes] |
| rs60226997 | 1.00[AMR][1000 genomes] |
| rs73513160 | 1.00[AMR][1000 genomes] |
| rs73513163 | 1.00[AMR][1000 genomes] |
| rs73513177 | 1.00[AMR][1000 genomes] |
| rs73653607 | 1.00[AMR][1000 genomes] |
| rs73653608 | 1.00[AMR][1000 genomes] |
| rs73653609 | 1.00[AMR][1000 genomes] |
| rs73653612 | 1.00[AMR][1000 genomes] |
| rs73653614 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73656340 | 1.00[AMR][1000 genomes] |
| rs73656341 | 1.00[AMR][1000 genomes] |
| rs73656342 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831683 | chr9:110275212-110461288 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv893700 | chr9:110365337-110451516 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv521747 | chr9:110418574-110441113 | Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:110413000-110437000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
