Variant report

Variant	rs73653608
Chromosome Location	chr9:110384800-110384801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12115410	1.00[AMR][1000 genomes]
rs12115825	1.00[AMR][1000 genomes]
rs56014746	1.00[AMR][1000 genomes]
rs56164957	1.00[AMR][1000 genomes]
rs56286321	1.00[AMR][1000 genomes]
rs58219987	1.00[AMR][1000 genomes]
rs60226997	1.00[AMR][1000 genomes]
rs60353834	1.00[AMR][1000 genomes]
rs73513160	1.00[AMR][1000 genomes]
rs73513163	1.00[AMR][1000 genomes]
rs73513177	1.00[AMR][1000 genomes]
rs73653607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653614	1.00[AMR][1000 genomes]
rs73656340	1.00[AMR][1000 genomes]
rs73656341	1.00[AMR][1000 genomes]
rs73656342	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110382000-110385000	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr9:110383000-110384800	Enhancers	Stomach Mucosa	stomach
3	chr9:110383600-110386200	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:110383600-110386600	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:110384200-110386400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:110384200-110390000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr9:110384400-110386400	Weak transcription	Colonic Mucosa	Colon
8	chr9:110384400-110386600	Weak transcription	Placenta	Placenta
9	chr9:110384400-110386800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:110384600-110386400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr9:110384800-110390000	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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