Variant report

Variant	rs73653612
Chromosome Location	chr9:110386803-110386804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12115410	1.00[AMR][1000 genomes]
rs12115825	1.00[AMR][1000 genomes]
rs56014746	1.00[AMR][1000 genomes]
rs56164957	1.00[AMR][1000 genomes]
rs56286321	1.00[AMR][1000 genomes]
rs58219987	1.00[AMR][1000 genomes]
rs60226997	1.00[AMR][1000 genomes]
rs60353834	1.00[AMR][1000 genomes]
rs73513160	1.00[AMR][1000 genomes]
rs73513163	1.00[AMR][1000 genomes]
rs73513177	1.00[AMR][1000 genomes]
rs73653607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653614	1.00[AMR][1000 genomes]
rs73656340	1.00[AMR][1000 genomes]
rs73656341	1.00[AMR][1000 genomes]
rs73656342	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110384200-110390000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr9:110384800-110390000	Weak transcription	Stomach Mucosa	stomach
3	chr9:110386200-110387200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:110386200-110387200	Enhancers	Adipose Nuclei	Adipose
5	chr9:110386200-110387200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr9:110386200-110387200	Enhancers	A549	lung
7	chr9:110386200-110387400	Enhancers	NHDF-Ad	bronchial
8	chr9:110386400-110387000	Enhancers	Colonic Mucosa	Colon
9	chr9:110386400-110387000	Enhancers	NHEK	skin
10	chr9:110386400-110387200	Enhancers	Fetal Stomach	stomach
11	chr9:110386400-110387200	Enhancers	Placenta Amnion	Placenta Amnion
12	chr9:110386400-110387200	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr9:110386600-110387200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr9:110386600-110387200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:110386600-110387200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr9:110386600-110387200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:110386600-110387200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:110386600-110387200	Enhancers	Fetal Muscle Leg	muscle
19	chr9:110386600-110387200	Enhancers	Placenta	Placenta
20	chr9:110386800-110387000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr9:110386800-110387200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:110386800-110387200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:110386800-110387200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:110386800-110387200	Enhancers	Fetal Muscle Trunk	muscle

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