Variant report

Variant	rs56024124
Chromosome Location	chr10:96442170-96442171
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr10:96441965-96442324	HepG2	liver:	n/a	chr10:96442193-96442205

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:96442154-96442204	HCT-116	colon:	n/a
2	chr10:96442154-96442204	NB4	blood:	n/a
3	chr10:96442154-96442204	HMEC	breast:	n/a
4	chr10:96442154-96442204	HIPEpiC	eye:	n/a
5	chr10:96442154-96442204	K562	blood:	n/a
6	chr10:96442154-96442204	HUVEC	blood vessel:	n/a
7	chr10:96442154-96442204	HCPEpiC	choroid plexus:	n/a
8	chr10:96442154-96442204	T-47D	breast:	n/a
9	chr10:96442154-96442204	MCF10A-Er-Src	breast:	n/a
10	chr10:96442154-96442204	SK-N-SH_RA	brain:	n/a
11	chr10:96442154-96442204	AG09319	gingival:	n/a
12	chr10:96442154-96442204	MCF-7	breast:	n/a
13	chr10:96442154-96442204	LNCaP	prostate:	n/a
14	chr10:96442154-96442204	SK-N-MC	brain:	n/a
15	chr10:96442154-96442204	AoSMC	blood vessel:	n/a
16	chr10:96442154-96442204	PFSK-1	brain:	n/a
17	chr10:96442154-96442204	AG09309	skin:	n/a
18	chr10:96442154-96442204	SK-N-SH	brain:	n/a
19	chr10:96442154-96442204	SKMC	muscle:	n/a
20	chr10:96442154-96442204	BJ	skin:	n/a
21	chr10:96442154-96442204	NHDF-neo	bronchial:	n/a
22	chr10:96442154-96442204	IMR90	lung:	fetal
23	chr10:96442154-96442204	ProgFib	skin:	n/a
24	chr10:96442154-96442204	AG10803	skin:	n/a
25	chr10:96442154-96442204	BE2_C	brain:	n/a
26	chr10:96442154-96442204	HPAEpiC	pulmonary alveolar:	n/a
27	chr10:96442154-96442204	HEK293	kidney:	embryo
28	chr10:96442154-96442204	RPTEC	kidney:	n/a
29	chr10:96442154-96442204	A549	lung:	n/a
30	chr10:96442154-96442204	SAEC	small airway:	n/a
31	chr10:96442154-96442204	HAEpiC	amniotic membrane:	n/a
32	chr10:96442154-96442204	Hepatocyte	liver:	n/a
33	chr10:96442154-96442204	AG04449	skin:	fetal
34	chr10:96442154-96442204	U87	brain:	n/a
35	chr10:96442154-96442204	HRE	kidney:	n/a
36	chr10:96442154-96442204	NH-A	brain:	n/a
37	chr10:96442154-96442204	HRPEpiC	eye:	n/a
38	chr10:96442154-96442204	HEEpiC	esophagus:	n/a
39	chr10:96442154-96442204	HCM	heart:	n/a
40	chr10:96442154-96442204	HepG2	liver:	n/a
41	chr10:96442154-96442204	Jurkat	blood:	n/a
42	chr10:96442154-96442204	ovcar-3	ovarian:	n/a
43	chr10:96442154-96442204	H1-hESC	embryonic stem cell:	embryo
44	chr10:96442154-96442204	GM12892	blood:	n/a
45	chr10:96442154-96442204	PrEC	prostate:	n/a
46	chr10:96442154-96442204	NHBE	bronchial:	n/a
47	chr10:96442154-96442204	NT2-D1	testis:	n/a
48	chr10:96442154-96442204	HCF	heart:	n/a
49	chr10:96442154-96442204	ECC-1	luminal epithelium:	n/a
50	chr10:96442154-96442204	GM12891	blood:	n/a

No data

Variant related genes	Relation type
CYP2C18	TF binding region
CYP2C18	CpG island

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1575935	1.00[AMR][1000 genomes]
rs17880188	1.00[AMR][1000 genomes]
rs1810769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2094295	1.00[AMR][1000 genomes]
rs2094297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2901782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4451645	0.83[AMR][1000 genomes]
rs55673362	1.00[AMR][1000 genomes]
rs55697065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55761123	1.00[AMR][1000 genomes]
rs55902049	1.00[AMR][1000 genomes]
rs56113807	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56248909	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56944168	1.00[AMR][1000 genomes]
rs57108647	1.00[AMR][1000 genomes]
rs57257088	1.00[AMR][1000 genomes]
rs57431619	0.93[AFR][1000 genomes]
rs57501369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57713587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57802384	1.00[AMR][1000 genomes]
rs58262373	1.00[AMR][1000 genomes]
rs58643119	1.00[AMR][1000 genomes]
rs58691803	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58818107	1.00[AMR][1000 genomes]
rs58984186	0.83[AMR][1000 genomes]
rs59080023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59955762	1.00[AMR][1000 genomes]
rs59962294	1.00[AMR][1000 genomes]
rs60231225	1.00[AMR][1000 genomes]
rs60234155	1.00[AMR][1000 genomes]
rs61093485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61410136	1.00[AMR][1000 genomes]
rs7088972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150810	1.00[AMR][1000 genomes]
rs74150811	1.00[AMR][1000 genomes]
rs74150813	1.00[AMR][1000 genomes]
rs74150814	1.00[AMR][1000 genomes]
rs74150816	1.00[AMR][1000 genomes]
rs74150822	1.00[AMR][1000 genomes]
rs74150830	1.00[AMR][1000 genomes]
rs74150837	1.00[AMR][1000 genomes]
rs74150849	1.00[AMR][1000 genomes]
rs74150850	1.00[AMR][1000 genomes]
rs74150854	1.00[AMR][1000 genomes]
rs74150887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150893	1.00[AMR][1000 genomes]
rs74150894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150897	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152308	1.00[AMR][1000 genomes]
rs74152309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152320	1.00[AMR][1000 genomes]
rs74152341	1.00[AMR][1000 genomes]
rs74152353	1.00[AMR][1000 genomes]
rs74152363	1.00[AMR][1000 genomes]
rs74152371	1.00[AMR][1000 genomes]
rs74152374	1.00[AMR][1000 genomes]
rs74154115	1.00[AMR][1000 genomes]
rs7902619	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv934280	chr10:96401297-96540495	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1040106	chr10:96405296-96514994	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1040976	chr10:96405296-96516804	Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv551954	chr10:96405329-96521249	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv522538	chr10:96405329-96547463	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1049225	chr10:96405502-96516804	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1052478	chr10:96406313-96516804	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv1037516	chr10:96407511-96516804	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv1047944	chr10:96407825-96563288	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv1050653	chr10:96407825-96634161	Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1049341	chr10:96416809-96471236	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv1043604	chr10:96424393-96486504	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv1037364	chr10:96435433-96634161	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	esv3380017	chr10:96439904-96662339	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv1046308	chr10:96441300-96633012	Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96435200-96444800	Weak transcription	Gastric	stomach
2	chr10:96436000-96443400	Enhancers	Fetal Intestine Large	intestine
3	chr10:96439600-96442800	Enhancers	HepG2	liver
4	chr10:96439600-96443200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr10:96440200-96442200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:96440200-96443200	Enhancers	Fetal Intestine Small	intestine
7	chr10:96440800-96442600	Enhancers	A549	lung
8	chr10:96441600-96443400	Enhancers	Colonic Mucosa	Colon
9	chr10:96442000-96442200	Active TSS	Liver	Liver
10	chr10:96442000-96443200	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr10:96442000-96443200	Enhancers	Stomach Mucosa	stomach

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