Variant report

Variant	rs59080023
Chromosome Location	chr10:96440595-96440596
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr10:96440266-96440614	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr10:96440356-96440596	MCF10A-Er-Src	breast:	n/a	n/a
3	NFIC	chr10:96440256-96440604	HepG2	liver:	n/a	n/a
4	EP300	chr10:96440054-96440842	A549	lung:	n/a	chr10:96440209-96440223
5	BCL3	chr10:96440125-96440773	A549	lung:	n/a	n/a
6	REST	chr10:96440172-96440719	A549	lung:	n/a	n/a
7	CEBPB	chr10:96440299-96440699	A549	lung:	n/a	chr10:96440500-96440511
8	EP300	chr10:96440190-96440694	HepG2	liver:	n/a	chr10:96440209-96440223
9	TEAD4	chr10:96440152-96440695	HepG2	liver:	n/a	n/a
10	FOSL2	chr10:96440094-96440785	A549	lung:	n/a	n/a
11	CEBPB	chr10:96440287-96440606	MCF-7	breast:	n/a	chr10:96440500-96440511
12	NR3C1	chr10:96440253-96440657	A549	lung:	n/a	n/a
13	STAT3	chr10:96440321-96440600	Hela-S3	cervix:	n/a	n/a
14	FOSL2	chr10:96440256-96440652	A549	lung:	n/a	n/a
15	FOXA2	chr10:96440233-96440806	A549	lung:	n/a	n/a
16	CEBPB	chr10:96440255-96440680	Hela-S3	cervix:	n/a	chr10:96440500-96440511
17	STAT3	chr10:96440264-96440674	MCF10A-Er-Src	breast:	n/a	n/a
18	HDAC2	chr10:96440253-96440629	HepG2	liver:	n/a	n/a
19	SETDB1	chr10:96440280-96440742	U2OS	brain:	n/a	n/a
20	CEBPB	chr10:96440242-96440692	HepG2	liver:	n/a	chr10:96440500-96440511
21	EP300	chr10:96440197-96440635	HepG2	liver:	n/a	chr10:96440209-96440223
22	ZBTB33	chr10:96440273-96440670	A549	lung:	n/a	n/a
23	CEBPB	chr10:96440358-96440615	MCF-7	breast:	n/a	chr10:96440500-96440511
24	CEBPB	chr10:96440251-96440706	A549	lung:	n/a	chr10:96440500-96440511
25	JUN	chr10:96440347-96440680	HepG2	liver:	n/a	chr10:96440501-96440514
26	JUND	chr10:96440189-96440727	A549	lung:	n/a	n/a
27	FOS	chr10:96440272-96440668	MCF10A-Er-Src	breast:	n/a	n/a
28	FOXA1	chr10:96440184-96440694	HepG2	liver:	n/a	n/a
29	ETS1	chr10:96440153-96440643	A549	lung:	n/a	n/a
30	BRCA1	chr10:96440359-96440638	Hela-S3	cervix:	n/a	n/a
31	GABPA	chr10:96440217-96440685	A549	lung:	n/a	n/a
32	FOS	chr10:96440260-96440728	MCF10A-Er-Src	breast:	n/a	n/a
33	FOXA1	chr10:96440208-96440635	HepG2	liver:	n/a	n/a
34	SP1	chr10:96440195-96440793	A549	lung:	n/a	n/a
35	SP1	chr10:96440203-96440679	HepG2	liver:	n/a	n/a
36	STAT3	chr10:96440280-96440609	MCF10A-Er-Src	breast:	n/a	n/a
37	FOXA1	chr10:96440270-96440652	HepG2	liver:	n/a	n/a
38	EP300	chr10:96440264-96440686	Hela-S3	cervix:	n/a	n/a
39	HNF4G	chr10:96440285-96440631	HepG2	liver:	n/a	n/a
40	CEBPB	chr10:96440269-96440616	HepG2	liver:	n/a	chr10:96440500-96440511
41	JUND	chr10:96440300-96440721	HepG2	liver:	n/a	n/a
42	FOXA1	chr10:96440301-96440681	HepG2	liver:	n/a	n/a
43	NR3C1	chr10:96440319-96440718	A549	lung:	n/a	n/a
44	MYBL2	chr10:96440235-96440726	HepG2	liver:	n/a	n/a
45	KAP1	chr10:96440332-96440765	U2OS	brain:	n/a	n/a
46	CREB1	chr10:96440311-96440767	HepG2	liver:	n/a	n/a
47	CEBPB	chr10:96440299-96440668	HepG2	liver:	n/a	chr10:96440500-96440511
48	SP1	chr10:96440076-96440848	A549	lung:	n/a	n/a
49	ARID3A	chr10:96440204-96440693	HepG2	liver:	n/a	n/a
50	TCF12	chr10:96440063-96440869	A549	lung:	n/a	n/a

Variant related genes	Relation type
CYP2C18	TF binding region

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1575935	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17880188	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1810769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1854033	0.86[AFR][1000 genomes]
rs2094295	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2094297	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2901782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4451645	0.83[AMR][1000 genomes]
rs55673362	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55697065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55761123	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55902049	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55925546	0.93[AFR][1000 genomes]
rs56024124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56113807	1.00[AMR][1000 genomes]
rs56248909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56281613	0.86[AFR][1000 genomes]
rs56944168	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57108647	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57257088	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57501369	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57713587	1.00[AMR][1000 genomes]
rs57802384	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58262373	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58643119	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58691803	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58818107	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58984186	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59955762	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59962294	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60231225	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60234155	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61093485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61410136	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7088972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150810	1.00[AMR][1000 genomes]
rs74150811	1.00[AMR][1000 genomes]
rs74150813	1.00[AMR][1000 genomes]
rs74150814	1.00[AMR][1000 genomes]
rs74150816	1.00[AMR][1000 genomes]
rs74150822	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150830	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150837	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150849	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150850	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150854	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150887	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150888	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150893	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150894	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152308	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74152309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152320	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74152341	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74152353	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74152363	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74152371	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74152374	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74154115	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7902619	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv934280	chr10:96401297-96540495	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1040106	chr10:96405296-96514994	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1040976	chr10:96405296-96516804	Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv551954	chr10:96405329-96521249	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv522538	chr10:96405329-96547463	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1049225	chr10:96405502-96516804	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1052478	chr10:96406313-96516804	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv1037516	chr10:96407511-96516804	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv1047944	chr10:96407825-96563288	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv1050653	chr10:96407825-96634161	Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1049341	chr10:96416809-96471236	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv1043604	chr10:96424393-96486504	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv1037364	chr10:96435433-96634161	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	esv3380017	chr10:96439904-96662339	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96435200-96444800	Weak transcription	Gastric	stomach
2	chr10:96436000-96443400	Enhancers	Fetal Intestine Large	intestine
3	chr10:96436400-96442000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:96439600-96442800	Enhancers	HepG2	liver
5	chr10:96439600-96443200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr10:96439800-96440600	Enhancers	Fetal Kidney	kidney
7	chr10:96439800-96440800	Flanking Active TSS	A549	lung
8	chr10:96440000-96442000	Weak transcription	Stomach Mucosa	stomach
9	chr10:96440200-96440600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:96440200-96440800	Enhancers	Hela-S3	cervix
11	chr10:96440200-96441600	Enhancers	Liver	Liver
12	chr10:96440200-96442200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:96440200-96443200	Enhancers	Fetal Intestine Small	intestine

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