Variant report

Variant	rs61410136
Chromosome Location	chr10:96364577-96364578
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:96364298..96366662-chr10:96373038..96375239,3	K562	blood:
2	chr10:96361276..96363371-chr10:96363793..96366493,2	K562	blood:
3	chr10:96346410..96347997-chr10:96362678..96364645,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1575935	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17884938	1.00[EUR][1000 genomes]
rs1810769	1.00[AMR][1000 genomes]
rs1854033	0.85[AFR][1000 genomes]
rs2094295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2094297	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2901782	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55673362	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55697065	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55761123	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55783943	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55852558	1.00[EUR][1000 genomes]
rs55902049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55925546	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56024124	1.00[AMR][1000 genomes]
rs56104261	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56113807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56188429	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56248909	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56281613	1.00[AFR][1000 genomes]
rs56666225	1.00[EUR][1000 genomes]
rs56735703	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56778943	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57096906	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57108647	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57257088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57501369	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57713587	1.00[AMR][1000 genomes]
rs57721947	1.00[EUR][1000 genomes]
rs57802384	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58262373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58283794	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58430331	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58643119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58691803	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58776336	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58984186	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59080023	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59365366	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59955762	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59962294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60231225	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60234155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61093485	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61668937	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7084812	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7088972	1.00[AMR][1000 genomes]
rs7101234	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150807	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150809	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150810	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150811	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150813	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150814	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150816	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150887	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150888	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150890	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150892	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150893	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150894	1.00[AMR][1000 genomes]
rs74150895	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150897	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150902	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74152304	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74152308	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152309	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74152310	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74152320	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152341	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152353	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152363	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153321	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153322	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153323	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153341	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153344	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153347	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153348	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153350	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153353	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7900670	1.00[EUR][1000 genomes]
rs7902619	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv517681	chr10:96343228-96387079	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96306400-96365600	Weak transcription	Esophagus	oesophagus
2	chr10:96306400-96370400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:96306400-96370600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:96306400-96371000	Weak transcription	Ovary	ovary
5	chr10:96306600-96379200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:96306800-96373000	Weak transcription	Primary T cells from cord blood	blood
7	chr10:96307000-96375000	Weak transcription	Osteobl	bone
8	chr10:96307200-96371200	Weak transcription	Fetal Brain Male	brain
9	chr10:96307600-96373200	Weak transcription	Brain Germinal Matrix	brain
10	chr10:96307800-96373000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:96308000-96373200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:96309600-96372800	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr10:96309600-96377000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:96312800-96372200	Strong transcription	Dnd41	blood
15	chr10:96314200-96373400	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr10:96315000-96369200	Weak transcription	Fetal Kidney	kidney
17	chr10:96316000-96371400	Weak transcription	Fetal Brain Female	brain
18	chr10:96316000-96374000	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:96316200-96373000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr10:96317000-96372600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr10:96324000-96376600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:96324200-96365600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:96325800-96376000	Weak transcription	NHLF	lung
24	chr10:96331000-96377400	Weak transcription	Placenta	Placenta
25	chr10:96338800-96372000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr10:96345400-96371200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr10:96345600-96372400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:96346600-96372600	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr10:96347200-96368000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr10:96348000-96369600	Weak transcription	Fetal Heart	heart
31	chr10:96348200-96364800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:96348600-96371400	Weak transcription	NHEK	skin
33	chr10:96349200-96371000	Weak transcription	Primary B cells from cord blood	blood
34	chr10:96350600-96368000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr10:96350600-96371800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:96351400-96371000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:96354200-96365400	Weak transcription	Gastric	stomach
38	chr10:96354400-96365000	Weak transcription	Fetal Intestine Small	intestine
39	chr10:96354800-96376600	Weak transcription	Fetal Intestine Large	intestine
40	chr10:96355000-96375600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:96355200-96369400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:96356200-96366400	Weak transcription	K562	blood
43	chr10:96357000-96376200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr10:96357800-96369400	Weak transcription	Thymus	Thymus
45	chr10:96357800-96372400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr10:96358200-96371600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr10:96358400-96377200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr10:96359200-96373200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:96359200-96382000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr10:96359400-96367200	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links