Variant report

Variant	rs58776336
Chromosome Location	chr10:96160574-96160575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:96120934..96124258-chr10:96160439..96165957,6	MCF-7	breast:
2	chr10:96157876..96161073-chr10:96161693..96163507,3	MCF-7	breast:
3	chr10:96121306..96124383-chr10:96159927..96163798,5	MCF-7	breast:
4	chr10:96160448..96164371-chr10:96304138..96307716,8	MCF-7	breast:
5	chr10:96122660..96124273-chr10:96159058..96162494,4	K562	blood:
6	chr10:96154206..96156824-chr10:96158509..96161283,2	MCF-7	breast:
7	chr10:96159758..96162488-chr10:96305268..96307065,2	K562	blood:

Variant related genes	Relation type
ENSG00000108239	Chromatin interaction
ENSG00000173145	Chromatin interaction
ENSG00000119969	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs55783943	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55852558	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55902049	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56104261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56188429	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56309155	1.00[AMR][1000 genomes]
rs56666225	1.00[EUR][1000 genomes]
rs56735703	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56778943	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57096906	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57257088	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57721947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58283794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58430331	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58643119	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59365366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59962294	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61410136	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61668937	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7084812	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150807	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150809	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150810	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150811	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150813	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150814	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150816	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150822	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150830	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150837	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150849	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150850	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150854	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7900670	1.00[EUR][1000 genomes]
rs7902619	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	esv3398177	chr10:96139011-96169931	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv3411992	chr10:96139011-96172041	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv551947	chr10:96154267-96162969	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv551948	chr10:96154267-96163020	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96155800-96161800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:96155800-96162000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:96157600-96161200	Weak transcription	Placenta	Placenta
4	chr10:96157800-96161800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:96157800-96161800	Weak transcription	NH-A	brain
6	chr10:96157800-96161800	Weak transcription	NHEK	skin
7	chr10:96158000-96161800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:96158200-96161600	Weak transcription	Hela-S3	cervix
9	chr10:96158200-96161800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:96158200-96161800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:96158200-96161800	Weak transcription	A549	lung
12	chr10:96158200-96161800	Weak transcription	HepG2	liver
13	chr10:96158200-96161800	Weak transcription	HSMMtube	muscle
14	chr10:96158200-96161800	Weak transcription	K562	blood
15	chr10:96158400-96161800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:96158600-96161800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:96158800-96161800	Weak transcription	HSMM	muscle

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