Variant report

Variant	rs7902619
Chromosome Location	chr10:96292228-96292229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96290006..96295152-chr10:96302633..96306565,5	K562	blood:
2	chr10:96291317..96293479-chr10:96310329..96311938,2	K562	blood:

Variant related genes	Relation type
ENSG00000119969	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1575935	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1810769	0.83[AMR][1000 genomes]
rs2094295	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2094297	0.83[AMR][1000 genomes]
rs2901782	0.83[AMR][1000 genomes]
rs55673362	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55697065	0.83[AMR][1000 genomes]
rs55783943	1.00[EUR][1000 genomes]
rs55852558	1.00[EUR][1000 genomes]
rs55902049	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56024124	0.83[AMR][1000 genomes]
rs56104261	1.00[EUR][1000 genomes]
rs56113807	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56188429	1.00[EUR][1000 genomes]
rs56248909	0.83[AMR][1000 genomes]
rs56666225	1.00[EUR][1000 genomes]
rs56735703	1.00[EUR][1000 genomes]
rs56778943	1.00[EUR][1000 genomes]
rs57096906	1.00[EUR][1000 genomes]
rs57257088	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57501369	0.83[AMR][1000 genomes]
rs57713587	0.83[AMR][1000 genomes]
rs57721947	1.00[EUR][1000 genomes]
rs57802384	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58262373	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58283794	1.00[EUR][1000 genomes]
rs58430331	1.00[EUR][1000 genomes]
rs58643119	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58691803	0.83[AMR][1000 genomes]
rs58776336	1.00[EUR][1000 genomes]
rs58984186	1.00[EUR][1000 genomes]
rs59080023	0.83[AMR][1000 genomes]
rs59365366	1.00[EUR][1000 genomes]
rs59955762	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59962294	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60231225	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60234155	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61093485	0.83[AMR][1000 genomes]
rs61410136	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61668937	1.00[EUR][1000 genomes]
rs7084812	1.00[EUR][1000 genomes]
rs7088972	0.83[AMR][1000 genomes]
rs7101234	1.00[EUR][1000 genomes]
rs74150807	1.00[EUR][1000 genomes]
rs74150809	1.00[EUR][1000 genomes]
rs74150810	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150811	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150813	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150814	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150816	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150822	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150830	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150837	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150849	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150850	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150854	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150887	0.83[AMR][1000 genomes]
rs74150888	0.83[AMR][1000 genomes]
rs74150890	0.83[AMR][1000 genomes]
rs74150892	0.83[AMR][1000 genomes]
rs74150893	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150894	0.83[AMR][1000 genomes]
rs74150895	0.83[AMR][1000 genomes]
rs74150897	0.83[AMR][1000 genomes]
rs74150902	0.83[AMR][1000 genomes]
rs74152304	0.83[AMR][1000 genomes]
rs74152308	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152309	0.83[AMR][1000 genomes]
rs74152310	0.83[AMR][1000 genomes]
rs74152320	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152341	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152353	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153321	1.00[EUR][1000 genomes]
rs74153322	1.00[EUR][1000 genomes]
rs74153323	1.00[EUR][1000 genomes]
rs74153341	1.00[EUR][1000 genomes]
rs74153344	1.00[EUR][1000 genomes]
rs74153347	1.00[EUR][1000 genomes]
rs74153348	1.00[EUR][1000 genomes]
rs74153350	1.00[EUR][1000 genomes]
rs74153353	1.00[EUR][1000 genomes]
rs7900670	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96223200-96293600	Weak transcription	NHDF-Ad	bronchial
2	chr10:96244400-96304600	Weak transcription	Aorta	Aorta
3	chr10:96250800-96294000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:96250800-96297400	Weak transcription	Small Intestine	intestine
5	chr10:96257000-96293400	Weak transcription	HepG2	liver
6	chr10:96261000-96304400	Weak transcription	NH-A	brain
7	chr10:96264200-96296800	Weak transcription	Brain Germinal Matrix	brain
8	chr10:96266000-96304600	Weak transcription	Fetal Kidney	kidney
9	chr10:96267400-96303800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:96268400-96304400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:96268800-96297200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:96268800-96304400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:96270200-96304200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:96271800-96294000	Weak transcription	Psoas Muscle	Psoas
15	chr10:96271800-96304000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:96272000-96294000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:96272000-96304600	Weak transcription	HSMMtube	muscle
18	chr10:96272200-96295800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr10:96272400-96293000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:96272600-96293400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr10:96273600-96294000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr10:96274400-96304000	Weak transcription	Stomach Mucosa	stomach
23	chr10:96274400-96304400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr10:96274600-96292400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:96274600-96304000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:96277000-96292400	Weak transcription	Primary B cells from peripheral blood	blood
27	chr10:96277200-96294000	Weak transcription	Left Ventricle	heart
28	chr10:96279600-96297200	Weak transcription	Spleen	Spleen
29	chr10:96280400-96304800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:96281400-96294000	Weak transcription	Brain Angular Gyrus	brain
31	chr10:96281400-96294600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr10:96281600-96293600	Weak transcription	Brain Anterior Caudate	brain
33	chr10:96281800-96296800	Weak transcription	Fetal Brain Female	brain
34	chr10:96282000-96293800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr10:96282200-96304200	Weak transcription	Colonic Mucosa	Colon
36	chr10:96284000-96293600	Weak transcription	Brain Substantia Nigra	brain
37	chr10:96284000-96304200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:96284000-96304400	Weak transcription	Osteobl	bone
39	chr10:96284200-96292800	Weak transcription	Duodenum Mucosa	Duodenum
40	chr10:96284200-96294000	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr10:96284200-96297200	Weak transcription	Pancreas	Pancrea
42	chr10:96284200-96299200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr10:96284200-96304400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:96284200-96304400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr10:96284800-96294000	Weak transcription	Fetal Muscle Leg	muscle
46	chr10:96284800-96294600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr10:96285000-96294200	Weak transcription	Ovary	ovary
48	chr10:96286000-96293400	Weak transcription	Placenta	Placenta
49	chr10:96286200-96303800	Weak transcription	Lung	lung
50	chr10:96286200-96304800	Weak transcription	Esophagus	oesophagus

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