Variant report

Variant	rs74153323
Chromosome Location	chr10:96166067-96166068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:96162320..96165263-chr10:96165537..96170524,5	K562	blood:
2	chr10:96119763..96122726-chr10:96163965..96166273,2	MCF-7	breast:
3	chr10:96161032..96163641-chr10:96165276..96169974,4	MCF-7	breast:
4	chr10:96161925..96164221-chr10:96166006..96168495,5	MCF-7	breast:
5	chr10:96146940..96149241-chr10:96165094..96167503,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173145	Chromatin interaction
ENSG00000108239	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs55783943	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55852558	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55902049	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56104261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56188429	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56309155	1.00[AMR][1000 genomes]
rs56666225	1.00[EUR][1000 genomes]
rs56735703	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56778943	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57096906	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57257088	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57721947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58283794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58430331	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58643119	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58776336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59365366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59962294	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61410136	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61668937	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7084812	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150807	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150809	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150810	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150811	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150813	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150814	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150816	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150822	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150830	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150837	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150849	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150850	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150854	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7900670	1.00[EUR][1000 genomes]
rs7902619	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	esv3398177	chr10:96139011-96169931	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv3411992	chr10:96139011-96172041	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	esv1801044	chr10:96162545-96170593	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	esv1815355	chr10:96162545-96189900	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	esv1817623	chr10:96162545-96189900	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96161800-96166200	Active TSS	Brain Substantia Nigra	brain
2	chr10:96163800-96184400	Weak transcription	Gastric	stomach
3	chr10:96164000-96171400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:96164200-96166800	Weak transcription	A549	lung
5	chr10:96164200-96168400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:96164200-96168800	Weak transcription	Small Intestine	intestine
7	chr10:96164200-96172800	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:96164200-96173200	Weak transcription	Ovary	ovary
9	chr10:96164400-96168800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:96164600-96169000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr10:96164600-96169200	Weak transcription	Brain Germinal Matrix	brain
12	chr10:96164600-96171400	Weak transcription	Fetal Stomach	stomach
13	chr10:96164600-96172200	Weak transcription	Fetal Kidney	kidney
14	chr10:96164600-96180000	Weak transcription	Fetal Intestine Small	intestine
15	chr10:96164800-96166400	Weak transcription	Aorta	Aorta
16	chr10:96164800-96167000	Weak transcription	Pancreas	Pancrea
17	chr10:96164800-96167800	Enhancers	Psoas Muscle	Psoas
18	chr10:96164800-96168200	Enhancers	HepG2	liver
19	chr10:96164800-96171200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:96164800-96171400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:96164800-96172600	Weak transcription	Stomach Mucosa	stomach
22	chr10:96164800-96182400	Weak transcription	Lung	lung
23	chr10:96164800-96188200	Weak transcription	Right Atrium	heart
24	chr10:96165000-96166600	Weak transcription	HMEC	breast
25	chr10:96165000-96166800	Enhancers	Hela-S3	cervix
26	chr10:96165000-96167600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:96165000-96168200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:96165000-96168800	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr10:96165000-96169200	Weak transcription	Fetal Brain Male	brain
30	chr10:96165000-96170800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr10:96165000-96171200	Weak transcription	Placenta	Placenta
32	chr10:96165000-96172800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr10:96165200-96166200	Weak transcription	GM12878-XiMat	blood
34	chr10:96165200-96169000	Enhancers	Brain Hippocampus Middle	brain
35	chr10:96165400-96166200	Enhancers	Brain Anterior Caudate	brain
36	chr10:96165400-96166200	Enhancers	Brain Cingulate Gyrus	brain
37	chr10:96165400-96166400	Weak transcription	Adipose Nuclei	Adipose
38	chr10:96165400-96166400	Enhancers	Fetal Intestine Large	intestine
39	chr10:96165400-96166600	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr10:96165400-96166600	Enhancers	HSMM	muscle
41	chr10:96165400-96166800	Enhancers	HSMMtube	muscle
42	chr10:96165400-96167600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:96165400-96168400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr10:96165400-96168600	Weak transcription	Fetal Lung	lung
45	chr10:96165400-96175800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:96165600-96166400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr10:96165600-96166400	Weak transcription	Brain Angular Gyrus	brain
48	chr10:96165600-96167400	Weak transcription	NHDF-Ad	bronchial
49	chr10:96165600-96168000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr10:96165600-96168200	Weak transcription	Osteobl	bone

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