Variant report

Variant	rs74150813
Chromosome Location	chr10:96294690-96294691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96290006..96295152-chr10:96302633..96306565,5	K562	blood:

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	TBC1D12	hsa-miR-103a-3p	chr10:96294674-96294696

Variant related genes	Relation type
ENSG00000119969	Chromatin interaction
TBC1D12	miRNA target site

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1575935	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1810769	1.00[AMR][1000 genomes]
rs2094295	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2094297	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2901782	1.00[AMR][1000 genomes]
rs55673362	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55697065	1.00[AMR][1000 genomes]
rs55783943	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55852558	1.00[EUR][1000 genomes]
rs55902049	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55925546	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56024124	1.00[AMR][1000 genomes]
rs56104261	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56113807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56188429	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56248909	1.00[AMR][1000 genomes]
rs56281613	0.92[AFR][1000 genomes]
rs56666225	1.00[EUR][1000 genomes]
rs56735703	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56778943	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57096906	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57257088	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57501369	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57713587	1.00[AMR][1000 genomes]
rs57721947	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57802384	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58262373	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58283794	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58430331	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58643119	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58691803	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58776336	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58984186	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59080023	1.00[AMR][1000 genomes]
rs59365366	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59955762	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59962294	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60231225	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60234155	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61093485	1.00[AMR][1000 genomes]
rs61410136	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61668937	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7084812	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7088972	1.00[AMR][1000 genomes]
rs7101234	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150807	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150809	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150810	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150822	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150830	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150837	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150849	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150850	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150854	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150887	1.00[AMR][1000 genomes]
rs74150888	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150890	1.00[AMR][1000 genomes]
rs74150892	1.00[AMR][1000 genomes]
rs74150893	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150894	1.00[AMR][1000 genomes]
rs74150895	1.00[AMR][1000 genomes]
rs74150897	1.00[AMR][1000 genomes]
rs74150902	1.00[AMR][1000 genomes]
rs74152304	1.00[AMR][1000 genomes]
rs74152308	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152309	1.00[AMR][1000 genomes]
rs74152310	1.00[AMR][1000 genomes]
rs74152320	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152341	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152353	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153321	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153322	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153323	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153341	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153344	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153347	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153348	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153350	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153353	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7900670	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7902619	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96244400-96304600	Weak transcription	Aorta	Aorta
2	chr10:96250800-96297400	Weak transcription	Small Intestine	intestine
3	chr10:96261000-96304400	Weak transcription	NH-A	brain
4	chr10:96264200-96296800	Weak transcription	Brain Germinal Matrix	brain
5	chr10:96266000-96304600	Weak transcription	Fetal Kidney	kidney
6	chr10:96267400-96303800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:96268400-96304400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:96268800-96297200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:96268800-96304400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:96270200-96304200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:96271800-96304000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:96272000-96304600	Weak transcription	HSMMtube	muscle
13	chr10:96272200-96295800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:96274400-96304000	Weak transcription	Stomach Mucosa	stomach
15	chr10:96274400-96304400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:96274600-96304000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:96279600-96297200	Weak transcription	Spleen	Spleen
18	chr10:96280400-96304800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:96281800-96296800	Weak transcription	Fetal Brain Female	brain
20	chr10:96282200-96304200	Weak transcription	Colonic Mucosa	Colon
21	chr10:96284000-96304200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:96284000-96304400	Weak transcription	Osteobl	bone
23	chr10:96284200-96297200	Weak transcription	Pancreas	Pancrea
24	chr10:96284200-96299200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:96284200-96304400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:96284200-96304400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr10:96286200-96303800	Weak transcription	Lung	lung
28	chr10:96286200-96304800	Weak transcription	Esophagus	oesophagus
29	chr10:96288600-96304400	Weak transcription	NHLF	lung
30	chr10:96289000-96297600	Weak transcription	Fetal Stomach	stomach
31	chr10:96289400-96304400	Weak transcription	HUVEC	blood vessel
32	chr10:96289400-96304600	Weak transcription	Fetal Intestine Small	intestine
33	chr10:96290000-96303600	Weak transcription	HMEC	breast
34	chr10:96290800-96294800	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr10:96291200-96303200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr10:96291200-96303800	Weak transcription	Hela-S3	cervix
37	chr10:96292000-96295000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr10:96292000-96295000	Strong transcription	Liver	Liver
39	chr10:96292000-96295200	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr10:96292000-96304800	Weak transcription	Fetal Brain Male	brain
41	chr10:96292200-96295400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr10:96292200-96295600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:96292200-96297400	Strong transcription	HSMM	muscle
44	chr10:96292400-96295000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:96292400-96295000	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:96292600-96295600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr10:96292800-96295000	Strong transcription	Duodenum Mucosa	Duodenum
48	chr10:96293000-96294800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:96293000-96295200	Strong transcription	Adipose Nuclei	Adipose
50	chr10:96293400-96295000	Strong transcription	Fetal Lung	lung

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