Variant report
Variant | rs74153321 |
---|---|
Chromosome Location | chr10:96155460-96155461 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
1
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000173145 | Chromatin interaction |
ENSG00000108239 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs55783943 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs55852558 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs55902049 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs56104261 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs56188429 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs56309155 | 1.00[AMR][1000 genomes] |
rs56666225 | 1.00[EUR][1000 genomes] |
rs56735703 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs56778943 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs57096906 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs57257088 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs57721947 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs58283794 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs58430331 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs58643119 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs58776336 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs59365366 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs59962294 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs61410136 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs61668937 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7084812 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7101234 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74150807 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74150809 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74150810 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs74150811 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs74150813 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs74150814 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs74150816 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs74150822 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs74150830 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs74150837 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs74150849 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs74150850 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs74150854 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs74153322 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74153323 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74153341 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74153344 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74153347 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74153348 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74153350 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74153353 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7900670 | 1.00[EUR][1000 genomes] |
rs7902619 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2761616 | chr10:95966768-96303701 | Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
2 | nsv831946 | chr10:96055190-96226438 | Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
3 | nsv497859 | chr10:96058024-97027747 | Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
4 | esv1819509 | chr10:96064300-96361776 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
5 | esv3398177 | chr10:96139011-96169931 | Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
6 | esv3411992 | chr10:96139011-96172041 | Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
7 | nsv551947 | chr10:96154267-96162969 | Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
8 | nsv551948 | chr10:96154267-96163020 | Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:96155200-96155800 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
2 | chr10:96155200-96155800 | ZNF genes & repeats | Foreskin Melanocyte Primary Cells skin01 | Skin |
3 | chr10:96155200-96155800 | Active TSS | HepG2 | liver |
4 | chr10:96155400-96155800 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |