Variant report

Variant	rs59962294
Chromosome Location	chr10:96316808-96316809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:96307884..96309770-chr10:96316701..96318335,2	K562	blood:
2	chr10:96303725..96305658-chr10:96314577..96317014,2	MCF-7	breast:
3	chr10:96305172..96306839-chr10:96315388..96317449,2	MCF-7	breast:
4	chr10:96313810..96315629-chr10:96316079..96318695,2	K562	blood:
5	chr10:96306294..96309021-chr10:96316197..96318090,2	K562	blood:

Variant related genes	Relation type
ENSG00000119969	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1575935	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1810769	1.00[AMR][1000 genomes]
rs1854033	0.85[AFR][1000 genomes]
rs2094295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2094297	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2901782	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55673362	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55697065	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55783943	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55852558	1.00[EUR][1000 genomes]
rs55902049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55925546	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56024124	1.00[AMR][1000 genomes]
rs56104261	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56113807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56188429	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56248909	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56281613	1.00[AFR][1000 genomes]
rs56666225	1.00[EUR][1000 genomes]
rs56735703	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56778943	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57096906	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57257088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57501369	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57713587	1.00[AMR][1000 genomes]
rs57721947	1.00[EUR][1000 genomes]
rs57802384	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58262373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58283794	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58430331	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58643119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58691803	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58776336	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58984186	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59080023	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59365366	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59955762	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60231225	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60234155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61093485	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61410136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61668937	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7084812	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7088972	1.00[AMR][1000 genomes]
rs7101234	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150807	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150809	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150810	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150811	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150813	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150814	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150816	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150887	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150888	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150890	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150892	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150893	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150894	1.00[AMR][1000 genomes]
rs74150895	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150897	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150902	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74152304	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74152308	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152309	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74152310	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74152320	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152341	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152353	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152363	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153321	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153322	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153323	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153341	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153344	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153347	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153348	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153350	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153353	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7900670	1.00[EUR][1000 genomes]
rs7902619	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96306200-96318600	Weak transcription	Aorta	Aorta
2	chr10:96306400-96321200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:96306400-96325400	Weak transcription	Lung	lung
4	chr10:96306400-96330600	Weak transcription	Placenta	Placenta
5	chr10:96306400-96357200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:96306400-96365600	Weak transcription	Esophagus	oesophagus
7	chr10:96306400-96370400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:96306400-96370600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr10:96306400-96371000	Weak transcription	Ovary	ovary
10	chr10:96306600-96349800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:96306600-96353800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr10:96306600-96379200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:96306800-96317200	Weak transcription	Primary B cells from peripheral blood	blood
14	chr10:96306800-96317200	Weak transcription	Fetal Intestine Large	intestine
15	chr10:96306800-96318600	Weak transcription	HSMM	muscle
16	chr10:96306800-96323000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:96306800-96330400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr10:96306800-96348000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr10:96306800-96348200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:96306800-96348400	Weak transcription	Primary B cells from cord blood	blood
21	chr10:96306800-96349800	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr10:96306800-96357200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr10:96306800-96373000	Weak transcription	Primary T cells from cord blood	blood
24	chr10:96307000-96358200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:96307000-96375000	Weak transcription	Osteobl	bone
26	chr10:96307200-96318600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr10:96307200-96320000	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr10:96307200-96371200	Weak transcription	Fetal Brain Male	brain
29	chr10:96307600-96318800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr10:96307600-96325400	Weak transcription	NHLF	lung
31	chr10:96307600-96327800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:96307600-96356000	Weak transcription	NHDF-Ad	bronchial
33	chr10:96307600-96373200	Weak transcription	Brain Germinal Matrix	brain
34	chr10:96307800-96348200	Weak transcription	NHEK	skin
35	chr10:96307800-96373000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:96308000-96373200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:96309400-96340800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:96309400-96354000	Weak transcription	K562	blood
39	chr10:96309600-96372800	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr10:96309600-96377000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr10:96310200-96339800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr10:96310400-96339800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr10:96310600-96317200	Weak transcription	GM12878-XiMat	blood
44	chr10:96312200-96334400	Strong transcription	A549	lung
45	chr10:96312200-96354000	Weak transcription	Gastric	stomach
46	chr10:96312400-96319200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr10:96312400-96324800	Strong transcription	Hela-S3	cervix
48	chr10:96312800-96372200	Strong transcription	Dnd41	blood
49	chr10:96313600-96317800	Strong transcription	HepG2	liver
50	chr10:96314000-96320600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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