Variant report

Variant	rs74150854
Chromosome Location	chr10:96373646-96373647
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96364298..96366662-chr10:96373038..96375239,3	K562	blood:
2	chr10:96372045..96374578-chr10:96375637..96378833,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CYP2C18-1	chr10:96372044-96373661	NONHSAT015736

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1575935	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17884938	1.00[EUR][1000 genomes]
rs1810769	1.00[AMR][1000 genomes]
rs1854033	0.85[AFR][1000 genomes]
rs2094295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2094297	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2901782	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55673362	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55697065	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55761123	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55783943	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55852558	1.00[EUR][1000 genomes]
rs55902049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55925546	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56024124	1.00[AMR][1000 genomes]
rs56104261	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56113807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56188429	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56248909	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56281613	1.00[AFR][1000 genomes]
rs56666225	1.00[EUR][1000 genomes]
rs56735703	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56778943	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57096906	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57108647	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57257088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57501369	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57713587	1.00[AMR][1000 genomes]
rs57721947	1.00[EUR][1000 genomes]
rs57802384	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58262373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58283794	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58430331	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58643119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58691803	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58776336	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58984186	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59080023	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59365366	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59955762	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59962294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60231225	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60234155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61093485	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61410136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61668937	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7084812	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7088972	1.00[AMR][1000 genomes]
rs7101234	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150807	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150809	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150810	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150811	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150813	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150814	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150816	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150887	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150888	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150890	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150892	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150893	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150894	1.00[AMR][1000 genomes]
rs74150895	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150897	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74150902	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74152304	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74152308	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152309	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74152310	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74152320	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152341	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152353	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152363	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153321	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153322	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153323	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153341	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153344	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153347	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153348	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153350	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153353	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7900670	1.00[EUR][1000 genomes]
rs7902619	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv517681	chr10:96343228-96387079	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96306600-96379200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:96307000-96375000	Weak transcription	Osteobl	bone
3	chr10:96309600-96377000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:96316000-96374000	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr10:96324000-96376600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:96325800-96376000	Weak transcription	NHLF	lung
7	chr10:96331000-96377400	Weak transcription	Placenta	Placenta
8	chr10:96354800-96376600	Weak transcription	Fetal Intestine Large	intestine
9	chr10:96355000-96375600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:96357000-96376200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:96358400-96377200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:96359200-96382000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:96360000-96373800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:96363200-96376200	Weak transcription	HSMM	muscle
15	chr10:96363400-96374400	Weak transcription	NH-A	brain
16	chr10:96365200-96374200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr10:96366200-96376800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:96366400-96374000	Weak transcription	Fetal Stomach	stomach
19	chr10:96369600-96374000	Weak transcription	GM12878-XiMat	blood
20	chr10:96369800-96375800	Weak transcription	Thymus	Thymus
21	chr10:96369800-96377200	Weak transcription	HMEC	breast
22	chr10:96370000-96374000	Weak transcription	Fetal Kidney	kidney
23	chr10:96370000-96377000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr10:96370000-96377000	Weak transcription	Hela-S3	cervix
25	chr10:96370000-96377200	Weak transcription	Fetal Lung	lung
26	chr10:96370000-96382800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr10:96370200-96382000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr10:96370400-96376200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:96370600-96382000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr10:96370600-96382000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr10:96371800-96376800	Weak transcription	Fetal Thymus	thymus
32	chr10:96372000-96373800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:96372000-96377400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:96372200-96377000	Weak transcription	Dnd41	blood
35	chr10:96372400-96380000	Weak transcription	A549	lung
36	chr10:96372600-96382000	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr10:96372600-96382200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:96372600-96382400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr10:96372800-96377200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr10:96372800-96382000	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr10:96373000-96374400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:96373000-96381600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr10:96373200-96382400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:96373200-96383800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr10:96373400-96374200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr10:96373600-96374600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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