Variant report

Variant	rs56104261
Chromosome Location	chr10:96175732-96175733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:96174854..96177531-chr10:96183896..96185905,2	MCF-7	breast:
2	chr10:96162368..96164918-chr10:96174079..96176855,3	K562	blood:
3	chr10:96173417..96176346-chr10:96177510..96181137,5	MCF-7	breast:
4	chr10:96170708..96172443-chr10:96175266..96177548,2	MCF-7	breast:
5	chr10:96171854..96174293-chr10:96175248..96177141,2	K562	blood:
6	chr10:96162891..96164490-chr10:96175616..96177129,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs55783943	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55852558	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55902049	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56188429	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56281613	0.85[AFR][1000 genomes]
rs56309155	1.00[AMR][1000 genomes]
rs56666225	1.00[EUR][1000 genomes]
rs56735703	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56778943	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57096906	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57257088	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57721947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58283794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58430331	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58643119	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58776336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59365366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59962294	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60234155	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61410136	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61668937	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7084812	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150807	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150809	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150810	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150811	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150813	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150814	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150816	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150822	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150830	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150837	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150849	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150850	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74150854	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74153321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7900670	1.00[EUR][1000 genomes]
rs7902619	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	esv1815355	chr10:96162545-96189900	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv1817623	chr10:96162545-96189900	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96163800-96184400	Weak transcription	Gastric	stomach
2	chr10:96164600-96180000	Weak transcription	Fetal Intestine Small	intestine
3	chr10:96164800-96182400	Weak transcription	Lung	lung
4	chr10:96164800-96188200	Weak transcription	Right Atrium	heart
5	chr10:96165400-96175800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:96165600-96180600	Weak transcription	Left Ventricle	heart
7	chr10:96167800-96175800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:96169400-96179200	Weak transcription	Pancreas	Pancrea
9	chr10:96169400-96183800	Weak transcription	HSMM	muscle
10	chr10:96170400-96175800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:96171600-96188200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:96171800-96183200	Weak transcription	Psoas Muscle	Psoas
13	chr10:96171800-96198200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:96172600-96176800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr10:96172800-96175800	Weak transcription	Fetal Kidney	kidney
16	chr10:96173400-96175800	Weak transcription	Brain Angular Gyrus	brain
17	chr10:96173400-96175800	Weak transcription	Brain Anterior Caudate	brain
18	chr10:96173400-96175800	Weak transcription	Ovary	ovary
19	chr10:96173400-96175800	Weak transcription	Stomach Mucosa	stomach
20	chr10:96173400-96176800	Weak transcription	Adipose Nuclei	Adipose
21	chr10:96173400-96182600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:96173400-96182600	Weak transcription	Osteobl	bone
23	chr10:96173400-96183000	Weak transcription	HSMMtube	muscle
24	chr10:96173400-96183400	Weak transcription	Colon Smooth Muscle	Colon
25	chr10:96173400-96188400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr10:96173600-96190200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:96173800-96176200	Weak transcription	Fetal Lung	lung
28	chr10:96173800-96183000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:96174200-96175800	Weak transcription	Brain Substantia Nigra	brain
30	chr10:96174200-96176600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:96174800-96175800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr10:96175000-96177600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:96175400-96176600	Enhancers	Brain Hippocampus Middle	brain
34	chr10:96175600-96176000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr10:96175600-96177200	Enhancers	Pancreatic Islets	Pancreatic Islet

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