Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11773948	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1366966	0.81[EUR][1000 genomes]
rs1429673	0.93[EUR][1000 genomes]
rs1429677	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1429679	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16873995	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16874116	0.80[EUR][1000 genomes]
rs1864318	0.93[EUR][1000 genomes]
rs1864319	0.94[EUR][1000 genomes]
rs4734895	0.83[AFR][1000 genomes]
rs56098431	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56141525	0.81[EUR][1000 genomes]
rs62525730	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62527364	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62527371	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62527406	0.94[EUR][1000 genomes]
rs62527409	0.81[EUR][1000 genomes]
rs6469029	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6469036	0.80[EUR][1000 genomes]
rs6984942	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7841482	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs993176	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106998800-107003600	Weak transcription	NH-A	brain
2	chr8:107000600-107006600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:107000800-107005400	Weak transcription	Aorta	Aorta
4	chr8:107000800-107009000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:107001400-107003000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr8:107001600-107003200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:107002400-107003200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr8:107002400-107003400	Weak transcription	Fetal Kidney	kidney
9	chr8:107002600-107006400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:107002600-107006600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr8:107002600-107006800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr8:107002600-107007000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr8:107002800-107006400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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