Variant report

Variant	rs16874116
Chromosome Location	chr8:107094661-107094662
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107059219..107060866-chr8:107093801..107095788,2	K562	blood:
2	chr8:107071595..107074143-chr8:107092425..107094759,2	K562	blood:
3	chr8:107092680..107095598-chr8:107097096..107099230,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251003	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11773948	0.80[EUR][1000 genomes]
rs1366966	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1429673	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1429677	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1429679	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1429682	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1540419	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16873995	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs1864318	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1864319	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2082066	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55739474	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55874550	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56098431	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs56141525	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56172266	0.80[EUR][1000 genomes]
rs57615676	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62527364	0.82[EUR][1000 genomes]
rs62527371	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62527406	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62527409	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6469036	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6469037	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6984942	0.84[EUR][1000 genomes]
rs7007882	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7841482	0.94[CEU][hapmap];0.91[YRI][hapmap];0.80[EUR][1000 genomes]
rs993176	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611842	chr8:107076421-107115482	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv611843	chr8:107088426-107104545	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv2830191	chr8:107088426-107115482	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107090400-107095000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:107090600-107099000	Weak transcription	Esophagus	oesophagus
3	chr8:107092400-107094800	Enhancers	NH-A	brain
4	chr8:107092400-107095400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:107092400-107096200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:107092400-107096200	Enhancers	Osteobl	bone
7	chr8:107092800-107096400	Enhancers	Adipose Nuclei	Adipose
8	chr8:107093000-107095200	Enhancers	Dnd41	blood
9	chr8:107093200-107095400	Enhancers	NHDF-Ad	bronchial
10	chr8:107093200-107095800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr8:107093400-107095000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:107093400-107095400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:107093400-107095600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr8:107093400-107096000	Enhancers	Brain Cingulate Gyrus	brain
15	chr8:107093400-107096200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr8:107093400-107096600	Enhancers	Colon Smooth Muscle	Colon
17	chr8:107093400-107096600	Enhancers	HUVEC	blood vessel
18	chr8:107093600-107094800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:107093600-107094800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr8:107093600-107095000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr8:107093600-107095000	Weak transcription	Ovary	ovary
22	chr8:107093600-107095000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr8:107093600-107095200	Weak transcription	Aorta	Aorta
24	chr8:107093600-107095800	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr8:107093600-107096000	Enhancers	Brain Substantia Nigra	brain
26	chr8:107093800-107095000	Weak transcription	Stomach Mucosa	stomach
27	chr8:107093800-107096200	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr8:107093800-107096400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr8:107093800-107099000	Weak transcription	Gastric	stomach
30	chr8:107094000-107095200	Enhancers	Brain Hippocampus Middle	brain
31	chr8:107094000-107095400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr8:107094000-107096200	Enhancers	Brain Angular Gyrus	brain
33	chr8:107094200-107095400	Enhancers	Fetal Brain Male	brain
34	chr8:107094200-107096000	Enhancers	Brain Anterior Caudate	brain
35	chr8:107094200-107096200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr8:107094200-107096200	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr8:107094200-107096200	Enhancers	NHLF	lung
38	chr8:107094200-107096600	Enhancers	Rectal Smooth Muscle	rectum
39	chr8:107094400-107095000	Enhancers	A549	lung
40	chr8:107094400-107095600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr8:107094400-107095800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr8:107094400-107096000	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr8:107094400-107096000	Enhancers	NHEK	skin
44	chr8:107094400-107096200	Enhancers	Hela-S3	cervix
45	chr8:107094600-107095000	Enhancers	Muscle Satellite Cultured Cells	--
46	chr8:107094600-107095800	Enhancers	H9 Cell Line	embryonic stem cell
47	chr8:107094600-107095800	Enhancers	HSMMtube	muscle
48	chr8:107094600-107096000	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr8:107094600-107096000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr8:107094600-107096200	Enhancers	Duodenum Smooth Muscle	Duodenum

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