Variant report

Variant	rs57615676
Chromosome Location	chr8:107091559-107091560
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:106952270..106952820-chr8:107091540..107092239,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1366966	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1429673	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1429677	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1429679	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1429682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1540419	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16874116	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1864318	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1864319	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2082066	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55739474	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55874550	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56098431	0.83[EUR][1000 genomes]
rs56141525	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62527364	0.82[EUR][1000 genomes]
rs62527371	0.81[EUR][1000 genomes]
rs62527406	0.85[EUR][1000 genomes]
rs62527409	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6469036	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6469037	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6984942	0.84[EUR][1000 genomes]
rs7007882	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs993176	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611842	chr8:107076421-107115482	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv437078	chr8:107086419-107092211	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv611843	chr8:107088426-107104545	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv2830191	chr8:107088426-107115482	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107089800-107091600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:107090400-107095000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr8:107090600-107099000	Weak transcription	Esophagus	oesophagus
4	chr8:107091400-107091600	Enhancers	NHLF	lung
5	chr8:107091400-107092800	Enhancers	Aorta	Aorta

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