Variant report

Variant	rs1429682
Chromosome Location	chr8:107092211-107092212
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:106952270..106952820-chr8:107091540..107092239,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1366966	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1429673	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1429677	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1429679	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1540419	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16873995	0.95[CEU][hapmap];0.83[GIH][hapmap];0.92[MEX][hapmap]
rs16874116	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1864318	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1864319	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2082066	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55739474	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55874550	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56098431	0.83[EUR][1000 genomes]
rs56141525	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57615676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62527364	0.82[EUR][1000 genomes]
rs62527371	0.81[EUR][1000 genomes]
rs62527406	0.85[EUR][1000 genomes]
rs62527409	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6469036	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6469037	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6984942	0.84[EUR][1000 genomes]
rs7007882	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7841482	0.94[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap]
rs993176	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611842	chr8:107076421-107115482	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv437078	chr8:107086419-107092211	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv611843	chr8:107088426-107104545	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv2830191	chr8:107088426-107115482	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1429682	KLF10	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107090400-107095000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:107090600-107099000	Weak transcription	Esophagus	oesophagus
3	chr8:107091400-107092800	Enhancers	Aorta	Aorta
4	chr8:107091800-107092600	Enhancers	Brain Anterior Caudate	brain
5	chr8:107091800-107092800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:107091800-107093400	Enhancers	Brain Hippocampus Middle	brain
7	chr8:107092000-107092800	Weak transcription	Adipose Nuclei	Adipose
8	chr8:107092000-107092800	Enhancers	HUVEC	blood vessel
9	chr8:107092200-107092800	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr8:107092200-107092800	Enhancers	NHLF	lung

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