Variant report

Variant	rs6469037
Chromosome Location	chr8:107093423-107093424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:106918347..106919345-chr8:107093305..107094021,2	MCF-7	breast:
2	chr8:106945007..106945989-chr8:107093330..107093872,2	K562	blood:
3	chr8:106951964..106952911-chr8:107092917..107093874,3	MCF-7	breast:
4	chr8:107092975..107093872-chr8:107282203..107282950,2	K562	blood:
5	chr8:107015900..107017263-chr8:107092920..107093525,5	MCF-7	breast:
6	chr8:107085770..107087985-chr8:107092764..107094318,2	MCF-7	breast:
7	chr8:107071595..107074143-chr8:107092425..107094759,2	K562	blood:
8	chr8:107092680..107095598-chr8:107097096..107099230,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254615	Chromatin interaction
ENSG00000251003	Chromatin interaction
ENSG00000164830	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1366966	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1429673	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1429677	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1429679	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1429682	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1540419	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16874116	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1864318	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1864319	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2082066	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55739474	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55874550	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56098431	0.82[EUR][1000 genomes]
rs56141525	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57615676	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62527364	0.81[EUR][1000 genomes]
rs62527406	0.84[EUR][1000 genomes]
rs62527409	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6469036	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6984942	0.82[EUR][1000 genomes]
rs7007882	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs993176	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611842	chr8:107076421-107115482	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv611843	chr8:107088426-107104545	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv2830191	chr8:107088426-107115482	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107090400-107095000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:107090600-107099000	Weak transcription	Esophagus	oesophagus
3	chr8:107092400-107093600	Enhancers	Stomach Smooth Muscle	stomach
4	chr8:107092400-107094800	Enhancers	NH-A	brain
5	chr8:107092400-107095400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:107092400-107096200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:107092400-107096200	Enhancers	Osteobl	bone
8	chr8:107092600-107094200	Weak transcription	Brain Anterior Caudate	brain
9	chr8:107092800-107094200	Weak transcription	NHLF	lung
10	chr8:107092800-107094400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr8:107092800-107096400	Enhancers	Adipose Nuclei	Adipose
12	chr8:107093000-107095200	Enhancers	Dnd41	blood
13	chr8:107093200-107093800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr8:107093200-107094200	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr8:107093200-107095400	Enhancers	NHDF-Ad	bronchial
16	chr8:107093200-107095800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr8:107093400-107093600	Enhancers	Aorta	Aorta
18	chr8:107093400-107093600	Flanking Active TSS	Brain Hippocampus Middle	brain
19	chr8:107093400-107093600	Enhancers	Gastric	stomach
20	chr8:107093400-107093600	Enhancers	Ovary	ovary
21	chr8:107093400-107093600	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr8:107093400-107094400	Weak transcription	NHEK	skin
23	chr8:107093400-107095000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr8:107093400-107095400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr8:107093400-107095600	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr8:107093400-107096000	Enhancers	Brain Cingulate Gyrus	brain
27	chr8:107093400-107096200	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr8:107093400-107096600	Enhancers	Colon Smooth Muscle	Colon
29	chr8:107093400-107096600	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links