Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107071316..107072942-chr8:107075565..107078465,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251003	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1366966	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1429673	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1429677	0.84[EUR][1000 genomes]
rs1429679	0.84[EUR][1000 genomes]
rs1429682	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1540419	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16873995	0.95[CEU][hapmap]
rs16874116	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1864318	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1864319	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55739474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55874550	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56098431	0.83[EUR][1000 genomes]
rs56141525	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57615676	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62527364	0.82[EUR][1000 genomes]
rs62527371	0.81[EUR][1000 genomes]
rs62527406	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62527409	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6469036	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6469037	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6984942	0.84[EUR][1000 genomes]
rs7007882	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7841482	0.94[CEU][hapmap]
rs993176	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611841	chr8:107048059-107090500	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv611842	chr8:107076421-107115482	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107073600-107078000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107077200-107077600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:107077400-107077600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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