Variant report

Variant	rs1366966
Chromosome Location	chr8:107084000-107084001
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11773948	0.81[EUR][1000 genomes]
rs1429673	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1429677	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1429679	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1429682	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1540419	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16873995	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs16874116	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1864318	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1864319	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2082066	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55739474	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55874550	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56098431	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56141525	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56172266	0.81[EUR][1000 genomes]
rs57615676	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62527364	0.83[EUR][1000 genomes]
rs62527371	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62527406	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62527409	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6469029	0.80[EUR][1000 genomes]
rs6469036	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6469037	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6984942	0.85[EUR][1000 genomes]
rs7007882	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7841482	0.94[CEU][hapmap];0.91[YRI][hapmap];0.81[EUR][1000 genomes]
rs993176	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611841	chr8:107048059-107090500	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv611842	chr8:107076421-107115482	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107084000-107084400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:107084000-107084600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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