Variant report

Variant	rs1540419
Chromosome Location	chr8:107075960-107075961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1366966	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1429673	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1429679	0.80[EUR][1000 genomes]
rs1429682	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16874116	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1864318	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1864319	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2082066	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55739474	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55874550	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56141525	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57615676	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62527406	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62527409	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6469036	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6469037	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7007882	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs993176	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611841	chr8:107048059-107090500	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107073600-107078000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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