Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr8:107073685-107073942	MCF10A-Er-Src	breast:	n/a	n/a
2	RAD21	chr8:107073729-107073909	IMR90	lung:	n/a	n/a
3	FOS	chr8:107073700-107073940	MCF10A-Er-Src	breast:	n/a	n/a
4	NFIC	chr8:107073479-107074117	SK-N-SH	brain:	n/a	n/a
5	ZNF263	chr8:107073630-107073990	HEK293-T-REx	kidney:	n/a	n/a
6	FOS	chr8:107073669-107073967	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr8:107073684-107073935	MCF10A-Er-Src	breast:	n/a	n/a
8	TCF12	chr8:107073479-107074143	SK-N-SH	brain:	n/a	n/a
9	POLR2A	chr8:107070729-107073898	IMR90	lung:	n/a	n/a
10	FOS	chr8:107073756-107073972	HUVEC	blood vessel:	n/a	n/a
11	CTCF	chr8:107073720-107073870	HEEpiC	esophagus:	n/a	n/a

Variant related genes	Relation type
ENSG00000251003	TF binding region

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11773948	0.81[EUR][1000 genomes]
rs1366966	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1429673	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1429677	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1429679	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1429682	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1540419	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16874116	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1864318	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1864319	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2082066	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55739474	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55874550	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56098431	0.84[EUR][1000 genomes]
rs56172266	0.81[EUR][1000 genomes]
rs57615676	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62527364	0.83[EUR][1000 genomes]
rs62527371	0.82[EUR][1000 genomes]
rs62527406	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62527409	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6469029	0.80[EUR][1000 genomes]
rs6469036	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6469037	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6984942	0.85[EUR][1000 genomes]
rs7007882	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7841482	0.81[EUR][1000 genomes]
rs993176	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611841	chr8:107048059-107090500	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107072400-107074800	Enhancers	NHDF-Ad	bronchial
2	chr8:107072600-107073800	Enhancers	HUVEC	blood vessel
3	chr8:107072600-107073800	Enhancers	NHLF	lung
4	chr8:107072600-107074000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr8:107072600-107074400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:107072800-107073800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:107073000-107074000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:107073000-107074600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:107073200-107074200	Enhancers	NH-A	brain
10	chr8:107073200-107074200	Enhancers	Osteobl	bone
11	chr8:107073400-107074000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:107073400-107074000	Enhancers	HMEC	breast
13	chr8:107073600-107074000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:107073600-107078000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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