Variant report

Variant	rs1429679
Chromosome Location	chr8:107046089-107046090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107046034..107047733-chr8:107070265..107072124,2	K562	blood:
2	chr8:107045809..107048572-chr8:107053112..107054871,2	K562	blood:
3	chr8:107044060..107046114-chr8:107059954..107062848,2	K562	blood:
4	chr8:107045005..107047534-chr8:107070265..107071984,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11773948	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1366966	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1429673	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1429677	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1429682	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1540419	0.80[EUR][1000 genomes]
rs16873995	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs16874116	0.95[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1835267	0.82[AFR][1000 genomes]
rs1864318	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1864319	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2082066	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs2115703	0.82[AFR][1000 genomes]
rs55729609	0.82[AFR][1000 genomes]
rs55739474	0.84[EUR][1000 genomes]
rs55874550	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56098431	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56141525	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56172266	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56352125	0.82[AFR][1000 genomes]
rs57615676	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62525730	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62527364	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62527371	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62527375	0.81[AFR][1000 genomes]
rs62527376	0.82[AFR][1000 genomes]
rs62527400	0.82[AFR][1000 genomes]
rs62527406	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62527409	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6469029	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6469031	0.82[AFR][1000 genomes]
rs6469036	0.95[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6469037	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6984942	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7007882	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7812766	0.82[AFR][1000 genomes]
rs7841482	0.94[CEU][hapmap];0.92[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7846262	0.82[AFR][1000 genomes]
rs993176	0.94[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107036400-107052000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107044800-107057200	Weak transcription	Aorta	Aorta
3	chr8:107045000-107057400	Weak transcription	Hela-S3	cervix
4	chr8:107045800-107046200	Enhancers	NH-A	brain
5	chr8:107045800-107046400	Enhancers	Osteobl	bone
6	chr8:107045800-107046600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:107046000-107048600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:107046000-107057200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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