Variant report

Variant	rs1429673
Chromosome Location	chr8:107057907-107057908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107055539..107058466-chr8:107069487..107071012,2	K562	blood:
2	chr8:107057702..107058412-chr8:107636030..107636553,2	MCF-7	breast:
3	chr8:107047054..107052420-chr8:107054763..107060033,4	K562	blood:
4	chr8:107054893..107058550-chr8:107060735..107063239,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11773948	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1366966	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1429677	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1429679	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1429682	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1540419	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16873995	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs16874116	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1864318	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1864319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2082066	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34177605	0.82[AFR][1000 genomes]
rs55739474	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55874550	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56098431	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56141525	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56172266	0.93[EUR][1000 genomes]
rs57615676	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62525730	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62527364	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs62527371	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62527406	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62527409	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6469029	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6469036	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6469037	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6984942	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7007882	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7841482	0.93[EUR][1000 genomes]
rs993176	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611841	chr8:107048059-107090500	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107052200-107069200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107053800-107058200	Weak transcription	K562	blood
3	chr8:107056000-107058800	Enhancers	Fetal Kidney	kidney
4	chr8:107056400-107059000	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:107056400-107060800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:107057000-107060600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:107057200-107058000	Enhancers	NH-A	brain
8	chr8:107057200-107058600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr8:107057200-107058600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr8:107057200-107059800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:107057200-107060600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:107057200-107060800	Enhancers	NHDF-Ad	bronchial
13	chr8:107057200-107060800	Enhancers	Osteobl	bone
14	chr8:107057400-107058600	Enhancers	Stomach Mucosa	stomach
15	chr8:107057400-107060000	Enhancers	Hela-S3	cervix
16	chr8:107057800-107058000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:107057800-107058200	Enhancers	A549	lung
18	chr8:107057800-107058400	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr8:107057800-107058600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr8:107057800-107058600	Enhancers	Aorta	Aorta
21	chr8:107057800-107058600	Flanking Active TSS	HUVEC	blood vessel
22	chr8:107057800-107059200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr8:107057800-107059400	Enhancers	NHEK	skin
24	chr8:107057800-107060000	Enhancers	Cortex derived primary cultured neurospheres	brain

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