The 2.0 version of rSNPBase

Variant report

Variant rs56352447
Chromosome Location chr2:48555477-48555478
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:48543400-48568600 Weak transcription HSMM muscle
2 chr2:48543600-48556600 Weak transcription H1 Cell Line embryonic stem cell
3 chr2:48543600-48559400 Weak transcription Rectal Mucosa Donor 29 rectum
4 chr2:48543600-48561000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
5 chr2:48543600-48570600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
6 chr2:48544200-48559600 Weak transcription Fetal Kidney kidney
7 chr2:48544400-48556200 Weak transcription NHDF-Ad bronchial
8 chr2:48544400-48558600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr2:48544400-48570400 Weak transcription NHEK skin
10 chr2:48544400-48570800 Weak transcription HMEC breast
11 chr2:48544600-48558600 Weak transcription Spleen Spleen
12 chr2:48544600-48564400 Weak transcription Fetal Intestine Small intestine
13 chr2:48544800-48559400 Weak transcription Right Atrium heart
14 chr2:48546600-48556200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr2:48548400-48556600 Weak transcription Skeletal Muscle Male skeletal muscle
16 chr2:48548600-48570600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
17 chr2:48550400-48562200 Enhancers Brain Substantia Nigra brain
18 chr2:48550600-48559400 Enhancers Brain Hippocampus Middle brain
19 chr2:48551600-48558600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
20 chr2:48552000-48556600 Enhancers Cortex derived primary cultured neurospheres brain
21 chr2:48552000-48556600 Weak transcription HUVEC blood vessel
22 chr2:48552000-48558800 Enhancers Primary T killer naive cells fromperipheralblood blood
23 chr2:48552400-48556600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr2:48552400-48556600 Weak transcription Duodenum Mucosa Duodenum
25 chr2:48552400-48556600 Weak transcription Fetal Brain Male brain
26 chr2:48552400-48557800 Weak transcription K562 blood
27 chr2:48552400-48561000 Enhancers Primary T helper cells PMA-I stimulated --
28 chr2:48552400-48561600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
29 chr2:48552400-48566200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
30 chr2:48552400-48570600 Weak transcription Aorta Aorta
31 chr2:48552600-48555600 Weak transcription iPS-15b Cell Line embryonic stem cell
32 chr2:48552600-48556200 Weak transcription ES-I3 Cell Line embryonic stem cell
33 chr2:48552600-48556600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
34 chr2:48553200-48555600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
35 chr2:48553200-48556200 Weak transcription HUES6 Cell Line embryonic stem cell
36 chr2:48553400-48558600 Weak transcription Primary T cells fromperipheralblood blood
37 chr2:48553400-48574400 Weak transcription Lung lung
38 chr2:48553600-48555600 Weak transcription Pancreatic Islets Pancreatic Islet
39 chr2:48553800-48555800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
40 chr2:48553800-48556200 Weak transcription Brain Angular Gyrus brain
41 chr2:48553800-48556600 Weak transcription Small Intestine intestine
42 chr2:48553800-48570800 Weak transcription Thymus Thymus
43 chr2:48554200-48555800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
44 chr2:48554400-48558200 Enhancers A549 lung
45 chr2:48554400-48561000 Enhancers Primary neutrophils fromperipheralblood blood
46 chr2:48554400-48570600 Weak transcription Sigmoid Colon Sigmoid Colon
47 chr2:48554600-48555800 Enhancers Primary monocytes fromperipheralblood blood
48 chr2:48554800-48561600 Weak transcription Psoas Muscle Psoas
49 chr2:48554800-48562000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
50 chr2:48555000-48555800 Enhancers Dnd41 blood

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015