The 2.0 version of rSNPBase

Variant report

Variant rs6545034
Chromosome Location chr2:48566935-48566936
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:48543400-48568600 Weak transcription HSMM muscle
2 chr2:48543600-48570600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr2:48544400-48570400 Weak transcription NHEK skin
4 chr2:48544400-48570800 Weak transcription HMEC breast
5 chr2:48548600-48570600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
6 chr2:48552400-48570600 Weak transcription Aorta Aorta
7 chr2:48553400-48574400 Weak transcription Lung lung
8 chr2:48553800-48570800 Weak transcription Thymus Thymus
9 chr2:48554400-48570600 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr2:48555400-48570600 Weak transcription NHLF lung
11 chr2:48556800-48570600 Weak transcription Fetal Thymus thymus
12 chr2:48556800-48571600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr2:48557000-48567600 Weak transcription Duodenum Smooth Muscle Duodenum
14 chr2:48557000-48573200 Weak transcription HUES6 Cell Line embryonic stem cell
15 chr2:48557000-48573400 Weak transcription ES-I3 Cell Line embryonic stem cell
16 chr2:48557200-48568600 Weak transcription HUVEC blood vessel
17 chr2:48557800-48570400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
18 chr2:48558200-48568200 Weak transcription Primary hematopoietic stem cells short term culture blood
19 chr2:48558400-48571400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
20 chr2:48558800-48567400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
21 chr2:48558800-48568400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr2:48558800-48571200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
23 chr2:48559000-48570600 Weak transcription Left Ventricle heart
24 chr2:48559000-48570600 Weak transcription Spleen Spleen
25 chr2:48559800-48568200 Weak transcription NHDF-Ad bronchial
26 chr2:48559800-48570600 Weak transcription Primary T cells fromperipheralblood blood
27 chr2:48559800-48570600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
28 chr2:48559800-48573400 Weak transcription Fetal Kidney kidney
29 chr2:48559800-48573400 Weak transcription Right Atrium heart
30 chr2:48560200-48567400 Weak transcription Adipose Nuclei Adipose
31 chr2:48560400-48568000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr2:48560400-48568600 Weak transcription Primary monocytes fromperipheralblood blood
33 chr2:48560400-48568600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr2:48560600-48573600 Weak transcription Fetal Muscle Trunk muscle
35 chr2:48561000-48567400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
36 chr2:48561000-48571200 Weak transcription Primary neutrophils fromperipheralblood blood
37 chr2:48561600-48567200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
38 chr2:48561600-48568000 Weak transcription Brain Inferior Temporal Lobe brain
39 chr2:48561600-48571400 Weak transcription HUES48 Cell Line embryonic stem cell
40 chr2:48561800-48571000 Weak transcription HUES64 Cell Line embryonic stem cell
41 chr2:48562000-48567600 Weak transcription Brain Cingulate Gyrus brain
42 chr2:48562000-48573400 Weak transcription Psoas Muscle Psoas
43 chr2:48562000-48573400 Weak transcription K562 blood
44 chr2:48562200-48568000 Weak transcription Primary T killer memory cells from peripheral blood blood
45 chr2:48562200-48568200 Weak transcription HepG2 liver
46 chr2:48562200-48571000 Weak transcription iPS-20b Cell Line embryonic stem cell
47 chr2:48562400-48568000 Weak transcription Pancreatic Islets Pancreatic Islet
48 chr2:48562800-48567400 Weak transcription Brain Substantia Nigra brain
49 chr2:48562800-48568200 Weak transcription Brain Angular Gyrus brain
50 chr2:48563000-48567400 Weak transcription Brain Hippocampus Middle brain

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Last update: Aug 31, 2015