Variant report
Variant | rs10193072 |
---|---|
Chromosome Location | chr2:48528035-48528036 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
(count:1 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-FOXN2-2 | chr2:48527999-48528357 | NONHSAT070619 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10153773 | 1.00[CHB][hapmap];0.91[CHD][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes] |
rs10174717 | 0.92[ASN][1000 genomes] |
rs10180295 | 0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs10186237 | 1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs10199431 | 1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes] |
rs10208124 | 0.95[ASN][1000 genomes] |
rs11676168 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.81[YRI][hapmap];0.92[ASN][1000 genomes] |
rs11682044 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.98[ASN][1000 genomes] |
rs11685861 | 1.00[YRI][hapmap] |
rs11690690 | 1.00[YRI][hapmap] |
rs12616792 | 0.89[ASN][1000 genomes] |
rs12713008 | 0.89[ASN][1000 genomes] |
rs12713009 | 0.86[ASN][1000 genomes] |
rs13383364 | 0.81[AFR][1000 genomes];0.97[ASN][1000 genomes] |
rs13385535 | 0.92[ASN][1000 genomes] |
rs13386751 | 0.93[ASN][1000 genomes] |
rs13387171 | 0.96[ASN][1000 genomes] |
rs13388291 | 1.00[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.95[ASN][1000 genomes] |
rs13426834 | 0.93[ASN][1000 genomes] |
rs13432998 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[JPT][hapmap];0.82[YRI][hapmap];0.94[ASN][1000 genomes] |
rs2471405 | 0.87[ASN][1000 genomes] |
rs28806843 | 0.84[AFR][1000 genomes];0.97[ASN][1000 genomes] |
rs28841370 | 0.88[ASN][1000 genomes] |
rs4290706 | 0.80[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs4411759 | 1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.83[JPT][hapmap];0.82[YRI][hapmap];0.90[ASN][1000 genomes] |
rs4438532 | 0.80[CEU][hapmap] |
rs4547573 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[ASN][1000 genomes] |
rs4606978 | 0.80[CEU][hapmap] |
rs4641990 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs56352447 | 0.92[ASN][1000 genomes] |
rs57668696 | 0.87[ASN][1000 genomes] |
rs58660534 | 0.88[ASN][1000 genomes] |
rs59264464 | 0.90[ASN][1000 genomes] |
rs59412192 | 0.90[ASN][1000 genomes] |
rs59761994 | 0.88[ASN][1000 genomes] |
rs60677957 | 0.93[ASN][1000 genomes] |
rs62136987 | 0.89[ASN][1000 genomes] |
rs62137001 | 0.88[ASN][1000 genomes] |
rs62137002 | 0.88[ASN][1000 genomes] |
rs62137003 | 0.88[ASN][1000 genomes] |
rs62137005 | 0.88[ASN][1000 genomes] |
rs62137006 | 0.88[ASN][1000 genomes] |
rs62137007 | 0.88[ASN][1000 genomes] |
rs62137008 | 0.86[ASN][1000 genomes] |
rs62137009 | 0.86[ASN][1000 genomes] |
rs62138801 | 0.90[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs6545026 | 0.92[YRI][hapmap] |
rs6545027 | 1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.93[ASN][1000 genomes] |
rs6545028 | 0.97[ASN][1000 genomes] |
rs6545029 | 0.84[AFR][1000 genomes];0.90[ASN][1000 genomes] |
rs6545030 | 1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes] |
rs6545034 | 0.88[ASN][1000 genomes] |
rs6545035 | 0.88[ASN][1000 genomes] |
rs6545036 | 0.96[YRI][hapmap] |
rs6705802 | 0.88[YRI][hapmap] |
rs6712029 | 1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes] |
rs6757206 | 0.92[ASN][1000 genomes] |
rs72818493 | 0.98[ASN][1000 genomes] |
rs72820405 | 0.88[ASN][1000 genomes] |
rs72887649 | 0.98[ASN][1000 genomes] |
rs7340322 | 0.90[ASN][1000 genomes] |
rs7566239 | 0.96[YRI][hapmap] |
rs7568960 | 0.92[ASN][1000 genomes] |
rs7574125 | 0.82[ASN][1000 genomes] |
rs7576964 | 0.92[YRI][hapmap] |
rs7577237 | 0.96[YRI][hapmap] |
rs7579932 | 0.96[YRI][hapmap] |
rs7600794 | 1.00[YRI][hapmap] |
rs7606104 | 1.00[YRI][hapmap] |
rs9309152 | 0.86[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv530831 | chr2:48059709-48632317 | Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
2 | nsv519831 | chr2:48072855-48566031 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
3 | nsv1003766 | chr2:48102244-48559654 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:48506000-48539000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr2:48528000-48539200 | Weak transcription | Primary T cells from cord blood | blood |