The 2.0 version of rSNPBase

Variant report

Variant rs59264464
Chromosome Location chr2:48553209-48553210
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:48543400-48568600 Weak transcription HSMM muscle
2 chr2:48543600-48553400 Weak transcription Rectal Smooth Muscle rectum
3 chr2:48543600-48554400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
4 chr2:48543600-48555400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr2:48543600-48556600 Weak transcription H1 Cell Line embryonic stem cell
6 chr2:48543600-48559400 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr2:48543600-48561000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
8 chr2:48543600-48570600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr2:48544200-48559600 Weak transcription Fetal Kidney kidney
10 chr2:48544400-48556200 Weak transcription NHDF-Ad bronchial
11 chr2:48544400-48558600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr2:48544400-48570400 Weak transcription NHEK skin
13 chr2:48544400-48570800 Weak transcription HMEC breast
14 chr2:48544600-48558600 Weak transcription Spleen Spleen
15 chr2:48544600-48564400 Weak transcription Fetal Intestine Small intestine
16 chr2:48544800-48559400 Weak transcription Right Atrium heart
17 chr2:48546600-48556200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr2:48547400-48554600 Enhancers Primary T helper 17 cells PMA-I stimulated --
19 chr2:48548200-48555200 Weak transcription Primary hematopoietic stem cells blood
20 chr2:48548400-48555200 Weak transcription Primary hematopoietic stem cells short term culture blood
21 chr2:48548400-48556600 Weak transcription Skeletal Muscle Male skeletal muscle
22 chr2:48548600-48570600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr2:48549800-48555000 Weak transcription Dnd41 blood
24 chr2:48550000-48553400 Enhancers iPS-18 Cell Line embryonic stem cell
25 chr2:48550000-48553800 Enhancers Primary T killer memory cells from peripheral blood blood
26 chr2:48550400-48554600 Enhancers Primary T helper cells fromperipheralblood blood
27 chr2:48550400-48554600 Enhancers Primary T regulatory cells fromperipheralblood blood
28 chr2:48550400-48554600 Enhancers HepG2 liver
29 chr2:48550400-48562200 Enhancers Brain Substantia Nigra brain
30 chr2:48550600-48559400 Enhancers Brain Hippocampus Middle brain
31 chr2:48550800-48554200 Enhancers Brain Cingulate Gyrus brain
32 chr2:48551200-48553400 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
33 chr2:48551400-48554000 Enhancers Primary neutrophils fromperipheralblood blood
34 chr2:48551400-48554600 Enhancers Brain Inferior Temporal Lobe brain
35 chr2:48551600-48554000 Enhancers Primary B cells from cord blood blood
36 chr2:48551600-48554000 Enhancers Primary T cells from cord blood blood
37 chr2:48551600-48554600 Enhancers Primary T helper naive cells fromperipheralblood blood
38 chr2:48551600-48558600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
39 chr2:48552000-48553400 Enhancers Primary B cells from peripheral blood blood
40 chr2:48552000-48553600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
41 chr2:48552000-48553800 Enhancers Brain Angular Gyrus brain
42 chr2:48552000-48556600 Enhancers Cortex derived primary cultured neurospheres brain
43 chr2:48552000-48556600 Weak transcription HUVEC blood vessel
44 chr2:48552000-48558800 Enhancers Primary T killer naive cells fromperipheralblood blood
45 chr2:48552200-48553400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
46 chr2:48552200-48553600 Enhancers Pancreatic Islets Pancreatic Islet
47 chr2:48552200-48554400 Enhancers Liver Liver
48 chr2:48552200-48555000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
49 chr2:48552200-48555400 Weak transcription iPS-20b Cell Line embryonic stem cell
50 chr2:48552400-48554000 Weak transcription Hela-S3 cervix

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Last update: Aug 31, 2015