Variant report

Variant	rs57556669
Chromosome Location	chr15:56332321-56332322
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:56288413..56291274-chr15:56330655..56333525,2	MCF-7	breast:
2	chr15:56331376..56333572-chr15:56534686..56537481,2	MCF-7	breast:
3	chr15:56285854..56287620-chr15:56331269..56333297,2	K562	blood:
4	chr15:56284513..56287737-chr15:56330157..56337447,9	MCF-7	breast:
5	chr15:56331395..56333344-chr15:56535817..56538241,2	MCF-7	breast:
6	chr15:56290352..56292488-chr15:56331467..56333363,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181827	Chromatin interaction
ENSG00000069869	Chromatin interaction
ENSG00000151575	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs55810058	0.83[AFR][1000 genomes]
rs56045501	0.83[AFR][1000 genomes]
rs56336002	0.83[AFR][1000 genomes]
rs59517069	0.83[AFR][1000 genomes]
rs59596096	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60537733	0.83[AFR][1000 genomes]
rs60757245	0.83[AFR][1000 genomes]
rs60833170	0.83[AFR][1000 genomes]
rs61011103	0.81[AFR][1000 genomes]
rs61385104	0.83[AFR][1000 genomes]
rs73422772	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422778	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422785	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422786	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422789	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73422793	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73422796	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73422802	0.83[AFR][1000 genomes]
rs73424806	0.81[AFR][1000 genomes]
rs73424808	0.81[AFR][1000 genomes]
rs73424810	0.83[AFR][1000 genomes]
rs73424812	0.83[AFR][1000 genomes]
rs73424813	0.83[AFR][1000 genomes]
rs73424815	0.83[AFR][1000 genomes]
rs73424817	0.81[AFR][1000 genomes]
rs73424829	0.80[AFR][1000 genomes]
rs73424833	0.83[AFR][1000 genomes]
rs73424834	0.83[AFR][1000 genomes]
rs73424838	0.83[AFR][1000 genomes]
rs74015374	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015382	0.83[AFR][1000 genomes]
rs8034701	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8035010	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8036222	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv569546	chr15:56274443-56337527	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a
3	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56327600-56334800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr15:56329000-56332400	Enhancers	Hela-S3	cervix
3	chr15:56329400-56332400	Weak transcription	Liver	Liver
4	chr15:56329400-56334800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr15:56329800-56335000	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr15:56330200-56332400	Enhancers	NHEK	skin
7	chr15:56330200-56333400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr15:56330200-56335400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:56330400-56334000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr15:56330400-56336400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:56330600-56333400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr15:56330600-56333400	Enhancers	Placenta Amnion	Placenta Amnion
13	chr15:56330600-56333400	Enhancers	NHDF-Ad	bronchial
14	chr15:56330600-56333400	Enhancers	Osteobl	bone
15	chr15:56330600-56334000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:56330800-56334000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr15:56330800-56334000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr15:56330800-56334600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:56330800-56336400	Enhancers	Fetal Intestine Large	intestine
20	chr15:56330800-56337400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:56331000-56334000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr15:56331000-56334200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr15:56331000-56336200	Enhancers	Fetal Intestine Small	intestine
24	chr15:56331200-56332600	Enhancers	A549	lung
25	chr15:56331400-56333400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr15:56331400-56334400	Enhancers	NHLF	lung
27	chr15:56331400-56335800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:56331400-56337800	Enhancers	HMEC	breast
29	chr15:56331600-56332400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr15:56331600-56332600	Enhancers	Pancreas	Pancrea
31	chr15:56331600-56333400	Enhancers	K562	blood
32	chr15:56331600-56333600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:56331600-56334000	Weak transcription	Primary T cells from cord blood	blood
34	chr15:56331600-56335400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr15:56331800-56333400	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr15:56332000-56333400	Enhancers	HSMM	muscle
37	chr15:56332000-56333400	Enhancers	HUVEC	blood vessel
38	chr15:56332000-56334200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr15:56332200-56332600	Enhancers	Lung	lung
40	chr15:56332200-56332800	Enhancers	Aorta	Aorta
41	chr15:56332200-56333400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr15:56332200-56333400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr15:56332200-56333400	Enhancers	Stomach Mucosa	stomach
44	chr15:56332200-56333400	Enhancers	NH-A	brain
45	chr15:56332200-56336400	Enhancers	Placenta	Placenta

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