Variant report

Variant	rs73424829
Chromosome Location	chr15:56337622-56337623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56336255..56339253-chr15:56339399..56341903,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs55810058	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56045501	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56336002	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57556669	0.80[AFR][1000 genomes]
rs57591461	1.00[AMR][1000 genomes]
rs58161519	1.00[AMR][1000 genomes]
rs59517069	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59596096	0.84[AFR][1000 genomes]
rs60537733	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60757245	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60833170	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61011103	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61385104	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422778	0.83[AFR][1000 genomes]
rs73422785	0.84[AFR][1000 genomes]
rs73422786	0.84[AFR][1000 genomes]
rs73422789	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73422793	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73422796	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73422802	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424806	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424808	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424810	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424812	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424813	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424815	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424817	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424833	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424834	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424838	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015374	0.83[AFR][1000 genomes]
rs74015382	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8034701	0.83[AFR][1000 genomes]
rs8035010	0.83[AFR][1000 genomes]
rs8036222	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56331400-56337800	Enhancers	HMEC	breast
2	chr15:56333400-56342200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:56334400-56337800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr15:56335000-56342200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:56335200-56337800	Enhancers	Hela-S3	cervix
6	chr15:56335400-56339800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:56335400-56339800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:56335400-56341400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:56336200-56339400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:56336400-56339800	Weak transcription	Placenta	Placenta
11	chr15:56336800-56337800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:56336800-56337800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:56336800-56337800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:56336800-56337800	Enhancers	NHEK	skin
15	chr15:56337200-56338000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr15:56337200-56339400	Weak transcription	HUVEC	blood vessel
17	chr15:56337400-56339600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:56337400-56344600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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