Variant report

Variant	rs59517069
Chromosome Location	chr15:56341988-56341989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56332455..56334509-chr15:56340544..56343174,3	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs55810058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56045501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56336002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57556669	0.83[AFR][1000 genomes]
rs57591461	1.00[AMR][1000 genomes]
rs58161519	1.00[AMR][1000 genomes]
rs59596096	0.87[AFR][1000 genomes]
rs60537733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60757245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60833170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61011103	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61385104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422772	0.81[AFR][1000 genomes]
rs73422778	0.85[AFR][1000 genomes]
rs73422785	0.87[AFR][1000 genomes]
rs73422786	0.87[AFR][1000 genomes]
rs73422789	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73422793	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73422796	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73422802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424806	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424808	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424817	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424829	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015374	0.85[AFR][1000 genomes]
rs74015382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8034701	0.85[AFR][1000 genomes]
rs8035010	0.85[AFR][1000 genomes]
rs8036222	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56333400-56342200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:56335000-56342200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:56337400-56344600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:56337800-56342800	Weak transcription	Hela-S3	cervix
5	chr15:56339800-56342800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:56340000-56343800	Weak transcription	NHEK	skin
7	chr15:56340000-56344400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:56340200-56344600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:56340200-56344600	Weak transcription	HMEC	breast
10	chr15:56340800-56344800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:56341400-56342800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr15:56341600-56342600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:56341800-56342800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:56341800-56343000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:56341800-56344600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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