Variant report

Variant	rs73424834
Chromosome Location	chr15:56339313-56339314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56284173..56286171-chr15:56338265..56340590,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000069869	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs55810058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56045501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56336002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57556669	0.83[AFR][1000 genomes]
rs57591461	1.00[AMR][1000 genomes]
rs58161519	1.00[AMR][1000 genomes]
rs59517069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59596096	0.87[AFR][1000 genomes]
rs60537733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60757245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60833170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61011103	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61385104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422772	0.81[AFR][1000 genomes]
rs73422778	0.85[AFR][1000 genomes]
rs73422785	0.87[AFR][1000 genomes]
rs73422786	0.87[AFR][1000 genomes]
rs73422789	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73422793	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73422796	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73422802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424806	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424808	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424817	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424829	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015374	0.85[AFR][1000 genomes]
rs74015382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8034701	0.85[AFR][1000 genomes]
rs8035010	0.85[AFR][1000 genomes]
rs8036222	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56333400-56342200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:56335000-56342200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:56335400-56339800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:56335400-56339800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:56335400-56341400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:56336200-56339400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:56336400-56339800	Weak transcription	Placenta	Placenta
8	chr15:56337200-56339400	Weak transcription	HUVEC	blood vessel
9	chr15:56337400-56339600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:56337400-56344600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:56337800-56339400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr15:56337800-56339400	Weak transcription	HMEC	breast
13	chr15:56337800-56339400	Weak transcription	NHEK	skin
14	chr15:56337800-56339800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:56337800-56342800	Weak transcription	Hela-S3	cervix
16	chr15:56338800-56340200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links