Variant report

Variant	rs60833170
Chromosome Location	chr15:56336997-56336998
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56336255..56339253-chr15:56339399..56341903,2	K562	blood:
2	chr15:56284513..56287737-chr15:56330157..56337447,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000069869	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs55810058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56045501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56336002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57556669	0.83[AFR][1000 genomes]
rs57591461	1.00[AMR][1000 genomes]
rs58161519	1.00[AMR][1000 genomes]
rs59517069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59596096	0.87[AFR][1000 genomes]
rs60537733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60757245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61011103	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61385104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422772	0.81[AFR][1000 genomes]
rs73422778	0.85[AFR][1000 genomes]
rs73422785	0.87[AFR][1000 genomes]
rs73422786	0.87[AFR][1000 genomes]
rs73422789	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73422793	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73422796	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73422802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424806	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424808	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424817	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424829	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015374	0.85[AFR][1000 genomes]
rs74015382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8034701	0.85[AFR][1000 genomes]
rs8035010	0.85[AFR][1000 genomes]
rs8036222	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv569546	chr15:56274443-56337527	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a
3	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56330800-56337400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:56331400-56337800	Enhancers	HMEC	breast
3	chr15:56333400-56337200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr15:56333400-56342200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:56334000-56337200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr15:56334000-56337400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr15:56334400-56337800	Enhancers	Placenta Amnion	Placenta Amnion
8	chr15:56335000-56342200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:56335200-56337800	Enhancers	Hela-S3	cervix
10	chr15:56335400-56337400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr15:56335400-56339800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:56335400-56339800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:56335400-56341400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:56335600-56337200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr15:56336000-56337000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr15:56336200-56337400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr15:56336200-56339400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr15:56336400-56337000	Enhancers	Primary T cells from cord blood	blood
19	chr15:56336400-56337000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr15:56336400-56337000	Enhancers	Dnd41	blood
21	chr15:56336400-56339800	Weak transcription	Placenta	Placenta
22	chr15:56336600-56337200	Enhancers	HUVEC	blood vessel
23	chr15:56336800-56337000	Enhancers	A549	lung
24	chr15:56336800-56337400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr15:56336800-56337800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:56336800-56337800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:56336800-56337800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:56336800-56337800	Enhancers	NHEK	skin

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