Variant report

Variant	rs57680472
Chromosome Location	chr6:36890240-36890241
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36889896..36892689-chr6:36954303..36956712,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10080913	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1405068	1.00[EUR][1000 genomes]
rs57023725	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57275916	1.00[EUR][1000 genomes]
rs58376164	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59341304	1.00[EUR][1000 genomes]
rs61140519	1.00[EUR][1000 genomes]
rs6900666	1.00[EUR][1000 genomes]
rs6927474	1.00[EUR][1000 genomes]
rs6931297	1.00[EUR][1000 genomes]
rs6931465	1.00[EUR][1000 genomes]
rs6932579	1.00[EUR][1000 genomes]
rs6932789	1.00[EUR][1000 genomes]
rs73420361	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73420362	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73420393	1.00[EUR][1000 genomes]
rs73732090	1.00[EUR][1000 genomes]
rs73732102	1.00[EUR][1000 genomes]
rs7752720	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9296202	1.00[EUR][1000 genomes]
rs9462242	1.00[EUR][1000 genomes]
rs9462243	1.00[EUR][1000 genomes]
rs9462244	1.00[EUR][1000 genomes]
rs9462245	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9462246	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9462247	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470433	1.00[EUR][1000 genomes]
rs9470435	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470436	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470437	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470438	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470446	1.00[EUR][1000 genomes]
rs9688391	1.00[EUR][1000 genomes]
rs9688402	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36854400-36893000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:36866200-36896400	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:36867000-36897000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:36877800-36896000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:36879400-36894000	Strong transcription	Fetal Brain Female	brain
6	chr6:36879600-36894000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:36879600-36895400	Strong transcription	Brain Germinal Matrix	brain
8	chr6:36880000-36892000	Strong transcription	Rectal Mucosa Donor 29	rectum
9	chr6:36880200-36893800	Strong transcription	K562	blood
10	chr6:36880600-36893600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr6:36880600-36900000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:36881000-36892000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:36881000-36894800	Weak transcription	Fetal Brain Male	brain
14	chr6:36881400-36893000	Strong transcription	Spleen	Spleen
15	chr6:36881400-36893600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:36881400-36893800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:36881400-36896200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:36881600-36891200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr6:36882000-36891600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:36882000-36893800	Strong transcription	Liver	Liver
21	chr6:36882200-36891000	Strong transcription	Thymus	Thymus
22	chr6:36882200-36892000	Strong transcription	Brain Anterior Caudate	brain
23	chr6:36882200-36894000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr6:36882400-36891200	Weak transcription	HUVEC	blood vessel
25	chr6:36882400-36891800	Strong transcription	Primary T cells from cord blood	blood
26	chr6:36882400-36893000	Strong transcription	Fetal Intestine Large	intestine
27	chr6:36882400-36893600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr6:36882400-36893800	Strong transcription	Duodenum Mucosa	Duodenum
29	chr6:36882400-36894800	Strong transcription	Fetal Intestine Small	intestine
30	chr6:36882400-36895600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr6:36882400-36896800	Weak transcription	Hela-S3	cervix
32	chr6:36882600-36893800	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr6:36882600-36893800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:36882600-36893800	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr6:36882600-36894000	Strong transcription	Dnd41	blood
36	chr6:36882800-36891400	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr6:36882800-36892800	Weak transcription	Fetal Kidney	kidney
38	chr6:36882800-36893800	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr6:36883000-36893600	Weak transcription	A549	lung
40	chr6:36883200-36893400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr6:36883600-36893800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:36883800-36892800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr6:36883800-36892800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr6:36884000-36895400	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr6:36884400-36894200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:36884800-36901200	Weak transcription	HMEC	breast
47	chr6:36886200-36891000	Weak transcription	Esophagus	oesophagus
48	chr6:36886200-36891000	Weak transcription	Small Intestine	intestine
49	chr6:36886600-36891400	Strong transcription	Fetal Muscle Trunk	muscle
50	chr6:36886800-36892800	Strong transcription	Aorta	Aorta

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